Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq97 129 2e-24 >seq97 Length=261666 Score = 129 bits (142), Expect = 2e-24 Identities = 359/537 (67%), Gaps = 19/537 (4%) Strand=Plus/Plus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| || |||||||| || |||||||| || ||| |||||| | || || Sbjct 3238 TTCTGGACCGCCGAAGAGATTGACCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTG 3297 Query 443397 TCTAGCCATGAACGCGATTT-CTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| || || | ||||| | |||| ||||||||||||| | || Sbjct 3298 ---AACGATGA-CGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGA 3353 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGC 443512 || || ||| ||||| ||||| ||| ||| || ||| | | ||||||| Sbjct 3354 TGGCATTGTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC 3413 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 || | |||||||| ||||| | ||||||||||| ||| ||||| |||| | Sbjct 3414 TCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCT 3473 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCATCGTTCA 443631 | | ||| | || ||| || || || || ||||| | |||| ||| || || Sbjct 3474 GCTCATCGACAC-CTACATC--AAGGAGAACAGCCAGCGCAACTATCTCTTCAACGC-CA 3529 Query 443632 T---GACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAG 443688 | ||| | || |||| | ||| || |||||| | ||||| || | || Sbjct 3530 TTGAGACTATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAG-GAC 3588 Query 443689 AAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 || | ||| | || | |||| || || || ||||||| ||||| || | || || Sbjct 3589 AAGAACTCTTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTC 3648 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 |||||| |||| || |||||||||||| | || ||||| || || |||| ||| ||||| Sbjct 3649 AGCGGCGCCTTT-GCATCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGAC 3707 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| ||||| || ||| ||| ||||||||| |||| |||||| ||||| || Sbjct 3708 CTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCT 3764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588333822490615