Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq93 280 2e-70 seq97 111 2e-19 >seq93 Length=305044 Score = 280 bits (310), Expect = 2e-70 Identities = 1157/1791 (65%), Gaps = 73/1791 (4%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || ||| ||| |||| | || ||||||||||| ||||||||||| | Sbjct 223871 TGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGTCTTGAGAC 223930 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | | ||||| | | ||||| | | |||| ||| || || | |||| Sbjct 223931 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCCTTCATGT 223990 Query 110451 AGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAA 110507 || ||||| ||| |||| |||||||||| || || | || | |||||||| | Sbjct 223991 GGATGTTCAGGGACTGGGACT--GGTCAATGAAAGCACCACGGTCG-GCCGCCATCTG-- 224045 Query 110508 TGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564 |||| | || | || ||||| || || || | ||||||||| || | Sbjct 224046 -GACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATCCTCGG 224104 Query 110565 GGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCT 110624 |||| | | ||| ||||| ||||| || | | | || | | |||||| | | Sbjct 224105 GGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAATACGGTTCTTCATGGCAT 224164 Query 110625 TGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACT 110684 ||||||||| ||| | | ||||| |||| || |||||||| |||| Sbjct 224165 CGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGAACT 224224 Query 110685 CACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTAT 110744 | || || ||| | | | |||||||||| | ||||| || || ||||| ||||| | Sbjct 224225 CGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 224284 Query 110745 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 110804 | |||| ||| || | ||| ||| |||||||| || || | | | ||||| || | Sbjct 224285 TGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTGTTGCGCA 224344 Query 110805 GACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA---GTTG-AGCTTGGTT 110860 ||| | ||||||||| | ||||||||| ||||| || | || | || || | Sbjct 224345 CACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCACAAGTCGGAG---GGCT 224401 Query 110861 TCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTT 110920 | || | |||||||||| || ||||| | || | || || || || |||| || | | Sbjct 224402 TGACAT-CCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTGATCCCTTGAATGAT 224460 Query 110921 TCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACAT 110979 | |||| || | | | | || | || | || ||||| |||| ||||| || || Sbjct 224461 TGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAA-GCCTCAAGGGCAGCGTGGTAGAT 224519 Query 110980 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAG 111034 || |||||||| | |||| ||| || ||| || ||||| |||| || Sbjct 224520 TGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAAGGCATGCGCAG 224579 Query 111035 CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094 |||| | || |||| || ||||| || ||||| | ||| ||||||||||| ||| Sbjct 224580 -GGCA----AGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGACGC 224634 Query 111095 ATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154 || || || || || || || || || || ||||| | ||| || Sbjct 224635 ATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAATAATCTTGTTCAGG 224694 Query 111155 TTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT 111214 || | ||| | ||| |||| ||| ||||| || | | | ||| | || | || Sbjct 224695 TTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATA---GCA---CCCT 224748 Query 111215 TCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 || ||| ||||| || ||||| | || ||||| ||||| ||||| |||| Sbjct 224749 TCGTTGTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCA 224808 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 || | |||||| | ||| || || || | ||| || || || || |||| Sbjct 224809 TCAGGGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGG 224868 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 111388 ||||| ||||| ||||| |||||| ||||||||||||||| |||| | || ||| Sbjct 224869 TTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTC 224928 Query 111389 TCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG-GCTGGTACAATGGCGTTGG 111446 || ||||| | || || || | | ||| | | || | | || | || | ||| Sbjct 224929 TCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGGATAGTCTTGCG--AC 224986 Query 111447 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCG 111505 | ||||||||| ||||||||| || | || || |||||||| ||| || ||| Sbjct 224987 CACGTCCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTC-GCCATAGCAGTCA 225045 Query 111506 GAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCC 111563 | || || || || || || || | || | ||| | ||| ||| |||||| | Sbjct 225046 GCAAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACAC 225103 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTA-CACCGAGCCTC 111621 |||||||||| || || |||||||| || | | | || || || | | ||| || |||| Sbjct 225104 GCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAG-TCGCGAGCACGGA-CCTC 225161 Query 111622 TTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 111681 || | ||| ||||| || | ||||||||||| | || ||| |||||||||||||| Sbjct 225162 CTCCTTACCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTC 225221 Query 111682 AAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGC 111735 || |||| || | | || ||||| ||| | || | || || | || Sbjct 225222 CAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGC 225278 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 111795 ||| ||| || || |||||||| ||||| ||||| | || ||| || || ||| Sbjct 225279 AGTGTTGTTGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGC 225338 Query 111796 AATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 111855 ||| ||| |||| | | |||| || || || || || |||||| ||| Sbjct 225339 AATGTAAGAACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTT 225398 Query 111856 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 111915 || || |||||| | | ||||| |||||||||| | || || ||||| | Sbjct 225399 GGAAATCATGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCAT 225458 Query 111916 GGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTG 111974 | | | | |||||| |||| ||| || || || |||||||| ||||||||||| | Sbjct 225459 GTCAACCAAGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTGG 225517 Query 111975 GTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 | | ||||| ||| | | |||| ||||| || ||||||||||| |||| || Sbjct 225518 GGGAGGCGTGGGTGA--AGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCTC 225575 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||||| || || |||||| | || || ||||| | ||||| |||||| Sbjct 225576 AATGTCGTCTCCCCAGATGCCAACAGCCACTCGCATAATCATGTGCTGTGG 225626 >seq97 Length=261666 Score = 111 bits (122), Expect = 2e-19 Identities = 530/823 (64%), Gaps = 37/823 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || ||||||||||||||||||||||| ||| |||| |||||| |||||| Sbjct 4046 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAAATGTTCTCCATA 3987 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGG----GTGGC--ACCCCAACTTGTTTGAGG 122484 |||||||| || || | || | || || || | |||| || Sbjct 3986 AAGTCAAAGGGGTTGGAAGACTTGTAGATCTTCTCGTTGCCGAGAGCAACA------AGC 3933 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || || || | ||| |||| ||||||| |||| | |||||||| || | ||| Sbjct 3932 AGGCGGTCAGCAACAAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCCAGCAGG 3873 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || ||||| || || | |||| ||| |||||| || || || | | |||| Sbjct 3872 GCGCAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATGATG 3813 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCA 122661 | |||| || | ||| | || | | || | || || || | ||| Sbjct 3812 TCACGGATCACCTCCTTGCTGGCGCGGTT-CTTGAGGTG--GGAGTGCAACAGGCAGGCA 3756 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| |||||||| || || || || || || || || ||| || || ||| Sbjct 3755 AAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGC 3696 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACC 122780 |||||||| |||||||| | ||| | || | ||| || | ||| |||||||||||| Sbjct 3695 ATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCA-AAGGCGCCGCTGAAGAAGATACC 3637 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACC 122839 ||| || ||||| |||| ||||| | || ||||| ||| ||| | | | || Sbjct 3636 CTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGA-AGAGTTCTTGTCCTGGATCC 3578 Query 122840 ATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAA-- 122896 | || || ||||| | |||||||| ||| || || | ||| | ||||| || || Sbjct 3577 ACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAAGA 3518 Query 122897 -ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTT 122955 ||| ||| | | | || ||||| ||||| |||| || | || || || Sbjct 3517 GATAGTTGC--GCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 3462 Query 122956 TCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 123014 ||| || | | | ||| ||| | || | ||||||| | || || ||| || Sbjct 3461 TCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGAT 3403 Query 123015 CTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 123073 ||| ||||| |||| || | | | ||||| ||||| ||||| || | | Sbjct 3402 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGG 3344 Query 123074 CAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCC 123130 ||||||| |||||||||| ||||| | ||| || | || |||| || | |||| Sbjct 3343 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 3284 Query 123131 AGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||||| ||||| ||||||| |||| ||||| || ||||| Sbjct 3283 AGTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 3241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031160007200