Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq93 232 8e-56 seq97 129 7e-25 >seq93 Length=305044 Score = 232 bits (256), Expect = 8e-56 Identities = 1165/1839 (63%), Gaps = 43/1839 (2%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | ||||||| |||||| || ||||| | || || |||||||| || ||| Sbjct 223864 TCAACGGTGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGTC 223923 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 ||||| || |||||||| || | ||||| || | |||| | || || Sbjct 223924 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 223983 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | |||| || ||||| ||||| || || ||||| || || || |||||||| Sbjct 223984 TTCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCATC 224043 Query 117978 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATC 118033 | | || || || ||| | ||||| || ||| |||| | ||| ||||| Sbjct 224044 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATC 224099 Query 118034 ATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCAT 118093 || ||||| | ||| || || ||||| || | | | || | | |||||| Sbjct 224100 CTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAATACGGTTCTTCAT 224159 Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAAC 118150 | | |||||||| ||| | | || |||| |||| || | |||||||| Sbjct 224160 GGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTT---GAGAAGCCAAGGGTTGACAAC 224216 Query 118151 AACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||||| || || ||| || | | | ||||| |||| ||||| ||||| ||||| Sbjct 224217 CTGGAACTCGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCA 224276 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 ||||||||| |||| ||| |||| ||| ||| || ||||| || || | ||| | ||| Sbjct 224277 CTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCT 224336 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC---GTAGT-TGA 118326 ||| || | ||| | ||| | || | |||||||||| |||||| || ||| || Sbjct 224337 GTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCACAAGTCGGA 224396 Query 118327 GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCT 118386 | | || | | |||||| || || || ||||| || | || || || ||||||| Sbjct 224397 G----GGCTTGACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTGATCCCT 224452 Query 118387 CAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGT 118446 |||| | || |||||||| |||| || | || ||||| ||||| |||| Sbjct 224453 TGAATGATTGGTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAGGGCAGCGT 224512 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 118506 | || ||||| ||||| || | |||| | ||||| || ||||| | | Sbjct 224513 GGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAAGGCA 224572 Query 118507 GTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTC 118566 || || || |||| || ||||| |||||||| | || || || | || | Sbjct 224573 TGCGCAGGGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGAC 224632 Query 118567 TCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTA 118626 ||| || || || || || || || || ||| ||| |||| | | || | Sbjct 224633 GCATGTTGCTGTTACGGGCCTCCTGGACAGGGTAGTGGTTCACATCAATAATCTTGTTCA 224692 Query 118627 GATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT 118686 | || | || ||||| |||| ||| |||||||| | | ||| | | | | Sbjct 224693 GGTTACGGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCACCCTTCGT 224752 Query 118687 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 118746 | | |||||| ||| ||||| | || |||| || || |||| |||||| Sbjct 224753 TGTAGTCGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAG 224812 Query 118747 TATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCT 118806 || |||||| ||||| || ||||| | ||| || || ||||| |||| ||||| Sbjct 224813 GGGCACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCT 224872 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 | || || ||| ||| || |||||||| |||||| | || | || ||||| | Sbjct 224873 TCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGG 224932 Query 118867 TTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 | |||| | || || | | ||| | | || | ||| | | ||| | | || Sbjct 224933 TCTGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGGATAGTCTTGCGACCACGT 224991 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| | ||||||||| || | || || ||||| || || | || | || Sbjct 224992 CCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGG 225051 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCA 119043 || || || | ||||| | ||| | ||| | ||| || |||||| ||||||| Sbjct 225052 CCAGGGCACTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTCA 225109 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 ||||||| || || |||||||| || ||| | || ||| || | || || | | Sbjct 225110 TGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTAC 225169 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || | || | || || | || ||| |||||||| || |||||||| | Sbjct 225170 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGA 225229 Query 119164 CCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217 || | | || | |||| ||| |||||| || || || |||||| || Sbjct 225230 TGGCAAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGT 225286 Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG 119277 | || || |||||||| ||||||||||| | ||| || || || ||| ||| || Sbjct 225287 TGAAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAATGTAAG 225346 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 | |||| | || ||||| || || || || || || ||| ||| || || Sbjct 225347 AACCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATCA 225406 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || ||| | | ||| || | ||||| || || || || |||| | | | | Sbjct 225407 TGGCACACGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCA 225466 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 |||||| |||| || |||||| || ||||||||||||||||| || || | ||| Sbjct 225467 AGAAGCATGAAGACAGCTG-GGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCG 225525 Query 119457 TGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 ||| ||| | | |||| ||||| || ||| ||||||| ||| |||||| | Sbjct 225526 TGGGTGA--AGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGT 225583 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 119574 | || || || | | || ||||||| ||||| || ||| || | | | | Sbjct 225584 CTCCCCAGATGCCAACAGCCACTCGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGC 225643 Query 119575 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 |||| ||| || ||||||| | |||||| ||||||| Sbjct 225644 CATCAAGCTTCAGGAGGTATGACCGCTCCAAAGTCTTGA 225682 >seq97 Length=261666 Score = 129 bits (142), Expect = 7e-25 Identities = 347/523 (66%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 3759 GGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCC 3700 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 3699 GGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGATGCAAAGGCGCCGCTGAAGAAGAT 3640 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || || || |||| || |||| ||||||||| | ||| | | Sbjct 3639 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGAGCAAAGGAAGAGTTCTTGTCCTGGAT 3580 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| || ||||| | ||||| || || || |||| |||| || || | || Sbjct 3579 CCACTTGATGGCCCAGTCAGCCTTCTTGCGAATGCAAGGGATAGTCTCAATGGCGTTGAA 3520 Query 130255 GAGTTCCTT--CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 ||| | || | ||| | || |||||||| | || ||||| || || || Sbjct 3519 GAGATAGTTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 3462 Query 130313 TCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371 ||| |||| | | ||| || | ||| | ||||||| | || || ||| || Sbjct 3461 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGAT 3403 Query 130372 CTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430 ||| ||||| | || || | | | ||||| ||||| ||||| || | | Sbjct 3402 CTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGG 3344 Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 130487 |||| || |||||||| | ||||| | || || | ||||||| || | |||| Sbjct 3343 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 3284 Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| || || || | ||| || || ||||| Sbjct 3283 AGTCGTGCAGATCCTTGGACAGGTCAATCTCTTCGGCGGTCCA 3241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434372842920