Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq93 293 3e-74 seq97 143 3e-29 seq95 93.3 5e-14 >seq93 Length=305044 Score = 293 bits (324), Expect = 3e-74 Identities = 940/1435 (66%), Gaps = 35/1435 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||||| | || || || || |||||||| |||| Sbjct 225626 CCACAGCACATGATTATGCGAGTGGCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 225567 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||||||||| || ||||| |||| | | ||| ||||| | || ||||||| Sbjct 225566 CTGGAGACATACCACCTCATGTCGAGCAAGTTCT--TCACCCACGCCTCCCCCACCCTCT 225509 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || |||| |||| |||||| | | | || ||||| | Sbjct 225508 TCAACGCTGGTACCCCGCAGGCCCAGCTGTCTTCATGCTTCTTGGTTGACATGAAGGACG 225449 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | || | |||||||||| ||||| | | |||||| || || ||| ||||| Sbjct 225448 ATAGCATTGAGGGTATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTG 225389 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || || || || || |||| | | |||| ||| ||| ||| || | Sbjct 225388 GCGGCATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGTTCTTACATTGCGGGCACCA 225329 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||| ||||| |||||||| || || ||| ||| || | || | Sbjct 225328 ACGGTACTTCCAACGGTATCATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 225269 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || | | || |||| || |||||||||| Sbjct 225268 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTGGAGCCATGGC 225212 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | ||||||||||| | || ||||| ||| | ||||||| || | Sbjct 225211 ACGCTGATGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTCCG-T 225153 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| || Sbjct 225152 GCTCGCGACTTATTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAG 225093 Query 104753 A--GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTG 104809 | ||| | ||| | ||| | || || || || ||||| || | || ||| | Sbjct 225092 AACTTGG--ACTGGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAT- 225036 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GA 104867 || |||||||| || || | || ||||||||| | || || || | | | || || Sbjct 225035 GGCGAGGAGTTCGAGGCTTTGTATGAGAAGTACGAGAAGGAGGGACGTG-GTC-GCAAGA 224978 Query 104868 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | | | ||| | || | ||||| | | || || | | || ||||||||||| | Sbjct 224977 CTATCCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGCAAC 224919 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| Sbjct 224918 CCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACC 224859 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || || || ||||| || || || | || | | | |||||| ||| Sbjct 224858 ATCCGCAGCTCTAACCTCTGCACTGAGATTATTGAGTACTGTGCCCCTGATGAGGTTGCT 224799 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105 || || ||| | || || | || ||||| ||||| || | || || | | | Sbjct 224798 GTCTGCAACTTGGCCTCTTTGGCCCTCCCTGCCTATGTCGACTACAACGA-AGGGTGCTA 224740 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 ||| | | | || || |||||||| || || || | ||||| |||| |||| Sbjct 224739 TGACTTTAAGAAGCTTCACGAAGTCACCAAGGTGGTTGTCCGTAACCTGAACAAGATTAT 224680 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 |||| || ||||| || || || ||||| || ||| | ||| | || || Sbjct 224679 TGATGTGAACCACTACCCTGTCCAGGAGGCCCGTAACAGCAACATGCGTCACAGACCTAT 224620 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 105284 ||| | ||||| |||||||| || |||| ||| || | || ||| | ||||| | Sbjct 224619 CGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCCCTG-CGCATGCCTTTTGAGT 224561 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | || || || | || || || |||||||| || || ||||| || |||| Sbjct 224560 CTCCTGAGGCTCGCGAGCTGAACAAGCAGATCTTTGAGACAATCTACCACGCTGCCCTTG 224501 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 |||| | ||| | || |||| || || || || || | || |||| || || | Sbjct 224500 AGGCTTCTATGGAGATTGCCAAGGTCGAGGGCCCCTACCAATCATTCAAGGGATCACCTG 224441 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC--CAAGCTTCACTACGA 105462 | || | || | |||||||| || |||||||| | || | | ||| | || Sbjct 224440 CATCTGAGGGCATCCTTCAATTCGACATGTGGGATGTCAAGCCCTCCGACTT--GTGGGA 224383 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| |||||||||| | ||||||||| | ||| | || ||||| | ||| | || Sbjct 224382 GTGGGACTCTCTCAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGCTTGCTCGTTGC 224323 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || |||||||| ||| ||| | || ||| |||| || ||||| ||||| || ||||| Sbjct 224322 CCCTATGCCAACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAGTGCTTCGAGCCCTA 224263 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 ||| | |||||||| | | | | ||| || || ||||| | |||||||| Sbjct 224262 CACCTCCAACATCTACCAGCGCCGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 224208 >seq97 Length=261666 Score = 143 bits (158), Expect = 3e-29 Identities = 354/524 (68%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | || || || |||||| || |||| ||||| | | | || Sbjct 3241 TGGACCGCCGAAGAGATTGACCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 3300 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 3301 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 3360 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 3361 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 3419 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 3420 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 3478 Query 94676 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 94733 | |||| || || ||||| | | | || || | ||||| | ||||| | || Sbjct 3479 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAACTATCTCTTCAACGCCATTGAGAC 3536 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 | || || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 3537 TATCCCTTGCATTCGCAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 3596 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 |||||||||| |||| || | || ||||| || ||||||||||||||| || Sbjct 3597 -TTCCTTTGCTCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCG 3655 Query 94853 CCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||| ||| | || | |||||||||||||||||||||||||| || || ||| ||| Sbjct 3656 CCTT-TGCATCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCC 3714 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 3715 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 3758 >seq95 Length=514606 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || |||||||||| ||||| ||| || | ||| | | | || | Sbjct 45838 GGCGTCGATTTCGTCAATGAAGATAATGCAAGGTGCGTTCTTTCGACCTTCGGCGAACAA 45897 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 || || ||||| | || |||||||||||||||||||| || | | || || Sbjct 45898 GTCTCGCACACGAGAAGGACCAACACCAACAAACATCTCCACGAACTCAGATCCGCTCAC 45957 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || | ||| || ||| || || || ||| | || ||||||||||||||| || | Sbjct 45958 GCTGAA-GAAAGGCACACCGGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTG 46016 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9938 | ||||| || ||||| | ||||||||| |||||||| ||||| |||| |||| | Sbjct 46017 TTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTTGCGCCCAGCTTCTCAAACT 46076 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 46077 ---TCTCAGGCTGCTTCAAGAA 46095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260019888680