Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq93 215 6e-51 seq1 102 9e-17 >seq93 Length=305044 Score = 215 bits (238), Expect = 6e-51 Identities = 423/617 (69%), Gaps = 14/617 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | || ||| || |||||| |||||||| ||||| ||| || Sbjct 225611 ATGCGAGTGGCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTCCTGGAGACATACCAC 225552 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| ||| || |||||| | || ||||| |||||||||||||| Sbjct 225551 CTCATGTCGAGC---AAGTTCTTCACCCACGCCTCCCCCACCCTCTTCAACGCTGGTACC 225495 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || | ||| |||| |||||| |||| | |||||||| || || || || Sbjct 225494 CCGCAGGCCCAGCTGTCTTCATGCTTCTTGGTTGACATGAAGGACGATAGCATTGAGGGT 225435 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || || || ||| ||||||| || |||||| | | || || ||||| | Sbjct 225434 ATCTATGACACTCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGCGGCATCGGCTTG 225375 Query 53432 CACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || || | || ||||||| | ||| | || ||| || ||||| || Sbjct 225374 AACG--TCCACCGCATCCGTGCCACCGGTTCTTACATTGCGGGCACCAACGGTACTTCCA 225317 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||| || |||||||||||||| ||| | |||||| ||||||||| Sbjct 225316 ACGGTATCATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTG 225257 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| || | || ||||||||||| ||||| |||||||| || | | | Sbjct 225256 GCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTGGAGCCATGGCACGCTGATGTCTTTG 225197 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTT 53668 |||| || || || || ||| || ||| | || ||| | || ||| || ||| | || Sbjct 225196 AGTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTCCG-TGCTCGCGACTTATTC 225138 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 ||||| |||||||| || ||||||||| | || |||||| || ||| ||| Sbjct 225137 CTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACTTGGACTGGACG 225078 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || |||||||| ||||||||||| |||| | | | || ||| || |||||||| | | Sbjct 225077 CTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTATGGCGAGGAGTTCGAGGC 225019 Query 53788 GATGTATCGGACGTACG 53804 ||||| || ||||| Sbjct 225018 TTTGTATGAGAAGTACG 225002 Score = 118 bits (130), Expect = 1e-21 Identities = 302/453 (67%), Gaps = 19/453 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||||| || || |||||||| || || | |||||| |||||||| Sbjct 224342 CGCAACAGCTTGCTCGTTGCCCCTATGCCAACTGCCAGCACTTCCCAGATCCTGGGCAAC 224283 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| |||||||| ||||| |||||||||||| |||||| ||| || || ||| Sbjct 224282 AATGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTCCTTGCCGGCGAG 224223 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||||||| | | | ||| ||| Sbjct 224222 TTCCAGGTTGTCAACCCTTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGT--CCG 224165 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGA 55715 | || |||| || || |||| |||||| ||| | ||||| | | | Sbjct 224164 ATGCCATGAAGAACCGTATTATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 224108 Query 55716 TTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 | || | | |||||| | ||| ||| || ||||||||| | ||| | | | Sbjct 224107 TCCCCGAGGATATCAAGGCATTGTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 224051 Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| || || |||||||| | ||| |||||||||||||| ||||||||| Sbjct 224050 TTGTCCAGATGGCGGCCGACCGTGGTGCTTTCATTGACCAGTCCCAGTCCCTGAACATCC 223991 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 |||| || | || || ||| |||| | | | |||||||| || |||||| | Sbjct 223990 ACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 223931 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 | |||||||| || ||||||||||| || |||| Sbjct 223930 GTCTCAAGACCGGCATGTACTATCTTCGTACCC 223898 >seq1 Length=17084797 Score = 102 bits (112), Expect = 9e-17 Identities = 187/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 117301 GCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAA 117360 ||||||||| | ||||| | ||||||||||| |||||| |||||||| | ||| || Sbjct 17010321 GCGAGTGAATGTATAACGGGGACTTGCAGCATCAGAGCCACCGGCAAGACGAGAACCAAA 17010380 Query 117361 TTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 | || || ||||||| || || | ||||||| |||||||| | || ||||| Sbjct 17010381 GTTACCGCTGGGCTCCAGGACATTGATATTGTTGGATCCCACAAAATCCTGGGCCAATCC 17010440 Query 117421 GACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 | || || ||| || ||||||| |||||||| || ||| | | | || || Sbjct 17010441 AATGATAGTCTGTTGCAGAGAGACCTCACCGTGGTGATAGGCAGTCAGTCCAGAGACATA 17010500 Query 117481 GCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 || ||||||| | ||||| ||| |||| || ||| ||||| || || || Sbjct 17010501 ACCAGCCAGCTCCACAACCTTTTCGTCCTTGAC--CACGTTGCGCTTGAAACATGCGTAG 17010558 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | |||||| || |||| ||||||| ||||| Sbjct 17010559 AGCACCTTTCGTTGACCGGGCTTCAACCCATC 17010590 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 152016 AGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCG 152075 |||| ||| || ||||| | || |||| || || ||||| |||||| || || || Sbjct 17010312 AGGAGACAAGCGAGTGAATGTATAACGGGGACTTGCAGCATCAGAGCCACCGGCAAGACG 17010371 Query 152076 CGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTG 152135 | ||||| | || |||||| |||| |||| ||||||| ||||| |||| ||| Sbjct 17010372 AGAACCAAAGTTACCGCTGGGCTCCAGGACATTGATATTGTTGGATCCCACAAAATCCTG 17010431 Query 152136 AGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTC 152195 ||||| | || || |||||| | |||||||||||||| || ||| | | Sbjct 17010432 GGCCAATCCAATGATAGTCTGTTGCAGAGAGACCTCACCGTGGTGATAGGCAGTCAGTCC 17010491 Query 152196 CGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACA 152255 | || || || |||| || | | ||||| |||| | || ||| ||||| ||| Sbjct 17010492 AGAGACATAACCAGCCAGCTCCACAACCTTTTCGTCCTTGACCACGTTGCGCTTGAAACA 17010551 Query 152256 GGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||||| | |||||| || || || ||||| || || Sbjct 17010552 TGCGTAGAGCACCTTTCGTTGACCGGGCTTCAACCCATC 17010590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215268098600