Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq93 311 1e-79 seq1 194 2e-44 seq47 129 7e-25 >seq93 Length=305044 Score = 311 bits (344), Expect = 1e-79 Identities = 1140/1760 (65%), Gaps = 69/1760 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || |||||||||||||| |||||||| || ||||||||| | |||| Sbjct 223894 GCCTGGGTACGAAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 223953 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | |||||||| || |||| ||||||||| ||||| ||||| Sbjct 223954 ATGCTGGTAATCTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGG 224013 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| ||||| || |||||||| | | |||| || | ||| ||||| Sbjct 224014 TCAATGAAAGCACCACGGTCGGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAG 224073 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268 || || |||| |||| | ||||| || |||| | | | | | || Sbjct 224074 ACGGTCTTGTACAATGCCTTGATA---TCCTCGGGGATGTTGGGGATGTTCTGAATGGAG 224130 Query 80269 CCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 |||| || |||| | || |||| || | ||||| ||| | | ||| Sbjct 224131 CCGTTCTCAGCAATAATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGG 224190 Query 80326 TCTTTCACAAGGT---GCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382 || || | ||| | ||| || | || |||| || || ||| || ||| | Sbjct 224191 TCCTTGAGAAGCCAAGGGTTGACAACCTGGA---ACTCGCCGGCAAGGACACGGCGCTGG 224247 Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 || | ||| | ||||| ||||| || ||| ||||| || |||||||| | ||||| Sbjct 224248 TAGATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAGGATCTGGGAAGTGCTG 224307 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC- 80501 || || ||||| ||| | || | || || |||| ||||||| |||||| | ||| Sbjct 224308 GCAGTTGGCATAGGGGCAACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCC 224367 Query 80502 --GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554 | | | || || || || || | ||| |||| ||||||||||| | Sbjct 224368 TTGAGAGAGTCCCACTCCCACAAGTCGG----AGGGCT-TGACATCCCACATGTCGAATT 224422 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 | | ||||||||| || || || || ||| ||| | | ||| |||||||| ||||| Sbjct 224423 GAAGGATGCCCTCAGATGCAGGTGATCCCTTGAATGATTGGTAGGGGCCCTCGACCTTGG 224482 Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 | | ||| || || |||||| ||||| || || |||||||| |||||||| Sbjct 224483 CAATCTCCATAGAAGCCTCAAGGGCAGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCA 224542 Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 |||| |||| || || || | || || || | ||| | ||||| || | Sbjct 224543 GCTCGCGAGCCTCAGGAGACTCAAAAGGCATGCGCAGGGCAAGGAAAGCATCAGCAAGAC 224602 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGG-CCTCCGGAATT 80793 |||| || || | |||| || | ||| ||| |||| | | ||| ||||| | | Sbjct 224603 CCTGGACACCAACACCGATAGGTCTGTGACGCATGTT-GCTGTTACGGGCCTCCTGGACA 224661 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 ||||| ||| ||| || | ||||||||| || ||| ||| || || || Sbjct 224662 GGGTAGTGGTTCACATCAATAATCTTGTTCAGGTTACGGACAACCACCTTGGTGACTTCG 224721 Query 80854 TGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 ||||| |||| |||||| | || ||| | ||| | || || ||| || Sbjct 224722 TGAAGCTTCTTAAAGTCATAGCACCCTTCGTTGTAGTCGACATAGGCAGGGAGGGCCAAA 224781 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCGTG 80964 || |||| ||||| || || ||||| |||| || | ||| ||| | || || ||| Sbjct 224782 GAGGCCAAGTTGCAGACAGCAACCTCATCAGGGGCA-CAGTA--CTCAATAATCTCAGTG 224838 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | ||||| || ||||||||||| |||||||| |||| |||||| | Sbjct 224839 CAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 224898 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| |||| | ||| | || |||||| ||| | | ||||||| | ||| Sbjct 224899 TCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 224958 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144 | || | || || |||||| || || | | ||||| | || Sbjct 224959 AGCTTCTGAGCGCGGATAGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAA 225018 Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 | ||||||| | || | | ||| ||| ||| | ||||||||||| |||||||| || Sbjct 225019 GCCTCGAACTCCTCGCCATAGCAGT-CAGCAAGGCCAGGGCACTCGTTGGGGCACATGAG 225077 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 |||||| || ||||| ||| ||||||||| || || |||||||| || Sbjct 225078 CGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAG 225137 Query 81264 GAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| | |||||| ||| || ||||||| | ||| ||||| ||| | || || || | Sbjct 225138 GAATAAGTCGCGAGCA-CGGACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAACT 225196 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGAC 81376 | | || || || |||||||||||||| || | ||| | | || | |||| Sbjct 225197 CAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAGGCACCAGGACGCTTG---T 225253 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||||||||||| |||||| | |||||| ||| || || || | ||| || ||||||| Sbjct 225254 TGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATGATAC 225313 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTG 81496 | | || |||||| || ||| | || || || |||| || | ||| | | | Sbjct 225314 CGTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAACCGGTGGCACGGA---TGC-GGTGG 225369 Query 81497 A-----AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 | ||| |||||||| || | | ||| |||||| |||||| |||| || || Sbjct 225370 ACGTTCAAG-CCGATGCCGCCAGCCATCTTGGAAATCATGGCACACGTCTTCAGAGTGTC 225428 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 ||| || ||||| |||||||| | |||||||||| |||||| || |||| || || Sbjct 225429 ATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCAAGAAGCATGAAGACAGCT--GG 225486 Query 81612 GCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 || | | | || || ||||| || || |||| ||||| |||| | | | ||| Sbjct 225487 GCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGAC 225546 Query 81670 ATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACA 81729 || |||| || || ||| ||| || ||| ||||| || || || | ||| || Sbjct 225547 ATGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGCCACT 225606 Query 81730 CGCATAAACATGTACTGGGG 81749 ||||||| ||||| ||| || Sbjct 225607 CGCATAATCATGTGCTGTGG 225626 >seq1 Length=17084797 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||| Sbjct 3412847 ATCATGCAAATCTTCGTCAAGACCCTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCA 3412788 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| ||||| | || ||||||||||||||||| || ||||| ||| Sbjct 3412787 TCCGACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGAC 3412728 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || |||||||| |||||||||||||| | || || || | ||||| Sbjct 3412727 CAGCAGCGTCTTATCTTTGCTGGCAAGCAACTCGAGGACGGCCGAACTCTGTCCGACTAC 3412668 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || ||||| || | || | || ||||| ||||| Sbjct 3412667 AACATCCAGAAGGAGTCTACTCTCCACTTGGTTCTCCGCCTTCGTGGTGG 3412618 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||| ||||| || || || ||||| ||||| ||||| ||| | Sbjct 3412546 GTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCGAC 3412487 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || || |||||||||||||| |||||||| ||||||||||| || || Sbjct 3412486 AATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGACTCATC 3412427 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || ||||||| || ||||| | ||||| || | || ||||| Sbjct 3412426 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAGGAG 3412367 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||| | |||||||| ||||| Sbjct 3412366 TCTACTCTCCACCTTGTCCTTCGTCTTCGTGGTGG 3412332 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || |||||||||||||| || || ||||| ||||| | Sbjct 3412102 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412043 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || || || ||||||||||| |||||||| |||||| Sbjct 3412042 GATACCATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 3411983 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || || ||||||||||| || || || | ||| ||| | ||| ||||| || Sbjct 3411982 CAGCGCTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGC-GACTACAA 3411924 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | ||| | || ||||| ||||| || Sbjct 3411923 CATCCAGAAGGAGAGCACACTGCACTTGGTCCTTCGCCTTCGTGGTGGCCA 3411873 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 1761058 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1761117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 1761118 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1761177 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || || ||||||||||| || ||||||| || ||||| ||| ||||| || Sbjct 1761178 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGC-GACTACAA 1761236 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| |||| || || ||||| Sbjct 1761237 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1761284 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || ||||||||||| || || ||||| ||||| | Sbjct 3412330 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412271 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || |||||||| |||||||| || || || || ||| Sbjct 3412270 GATACCATCGACAATGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCGGATCAG 3412211 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || |||||||| ||||| || ||||| | || || | ||| ||||| || Sbjct 3412210 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTTTGAGC-GACTACAA 3412152 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| ||||| || ||| | ||||| || ||||| Sbjct 3412151 CATTCAGAAGGAGAGCACACTTCACCTTGTCCTCCGTCTCCGTGGTGG 3412104 >seq47 Length=144723 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 138574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 138515 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 138514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 138455 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 138454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 138395 Query 27595 G 27595 | Sbjct 138394 G 138394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309637209840