Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 9e-14 >seq1 Length=17084797 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||| |||||||| |||||| || ||||| || || || Sbjct 3412618 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3412677 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || ||||| || || ||||| || | |||||| ||||| || || Sbjct 3412678 AGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 3412737 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || || | || ||||| |||||| Sbjct 3412738 ATACCCTCCTTGTC-CTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCAC 3412796 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || |||||||| | || || || || || |||||| || Sbjct 3412797 CTCAAGGGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCATGATG 3412848 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CT 34536 ||| || | ||| || | ||||| || || ||||||||||| || ||||| || | || Sbjct 3411875 GCCACCACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 3411934 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 || ||| || ||||||| || || ||||| || || || || ||||| ||||| || Sbjct 3411935 CAAGGTG--CGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGA 3411992 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655 || | |||||||||||| |||| || | || ||| | || || || ||| Sbjct 3411993 GGAATGCCCTCCTTGTCTTGGATC-TTGGACTTGACGTTGTCGATGGTATCAGAAGACTC 3412051 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | ||| || || || ||||| | || || ||||| || ||||| Sbjct 3412052 CACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||||| |||||| |||||||| || || || Sbjct 3412332 CCACCACGAAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 3412391 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||| || ||||| || || || | ||||| ||||| || || Sbjct 3412392 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGA 3412451 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 3412452 ATGCCCTCCTTGTCCTGGATCTT 3412474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729189572931