Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq58 87.8 2e-12 >seq58 Length=533810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG--GGGGTTCC 34379 || || ||||||||||||| ||||||| || || || || ||| |||| || | | Sbjct 276405 GGCGTCAAGATCTGGGACGGCAACGGGTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGAC 276463 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | || |||| |||||| ||||||| |||||||| ||||||||| | |||||||| | Sbjct 276464 CCAC-CGCGAGGTTGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCG 276522 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT 34491 | ||||| || | || ||| | ||||| | || |||| | |||||||| Sbjct 276523 CCGAGTA-CGTAGATGCAAAGACAGACTACGCCGGCAAGGGTGTCGACCAGCT 276574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAA 6912 |||||||| | |||| || | ||||| | ||| || | || ||||| || ||||| Sbjct 276574 AGCTGGTCGACACCCTTGCCGGCGTAGTCTGTCTTTGCATCTACG-TACTCGGCGCCAAA 276516 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972 ||| | ||||||||| |||||||| ||||||| |||||| |||| || | || | | Sbjct 276515 GTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCAACCTCGCG-GTGGGTCAGGC 276457 Query 6973 C--CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | |||| ||| || || || || ||||||| ||||||||||||| || || Sbjct 276456 CGACGCT-GTCGAGGAACTCGCGGGACCCGTTGCCGTCCCAGATCTTGACGCC 276405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261800449040