Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-40 seq47 125 2e-23 >seq1 Length=17084797 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| ||||| ||||| || || ||||| || || | ||||| Sbjct 3412337 ACGAAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 3412396 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || |||||||| || || || ||||||||||||| || Sbjct 3412397 TCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCC 3412456 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || |||||||| ||||| || |||||||| Sbjct 3412457 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACCTCGAG 3412516 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||| ||||| ||||| || Sbjct 3412517 GGTGATGGTCTTTCCGGTGAGGGTCTTGAC 3412546 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || ||||| | ||||| Sbjct 1761269 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 1761210 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || ||||| || |||| || ||||||||| Sbjct 1761209 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1761150 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||||||| Sbjct 1761149 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1761090 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 1761089 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1761055 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | ||| || ||| ||| || |||||||| || || | ||||| Sbjct 3411881 ACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG- 3411939 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || |||||||||||||| || |||||||| | ||| || ||||||||||||| | Sbjct 3411940 TGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGC 3411999 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | |||||||| |||||||| || ||||| |||||||| ||||| || ||||||| Sbjct 3412000 CCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGA 3412059 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || || ||||| ||||| | ||||| Sbjct 3412060 GGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| ||||| || |||||||| || || | || || Sbjct 3412623 ACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 3412682 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || |||||||| || |||||||| || || ||||||||||| | || Sbjct 3412683 TCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACC 3412742 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| ||||| || ||||||||||| || || ||||| || Sbjct 3412743 CTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAG 3412802 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | ||||| Sbjct 3412803 GGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCAT 3412844 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 |||||||||||||| ||| ||| || || ||||| || || | ||| || | || || Sbjct 3412119 AGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAA-AGTGCGGCCGTC 3412177 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| || |||||||| || || || || || || | || ||||| || Sbjct 3412178 CTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC 3412237 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| |||||| || || || |||||||| ||||| || |||||||| ||||| || Sbjct 3412238 CTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGT 3412297 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || ||||| || || | |||||| Sbjct 3412298 CTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 >seq47 Length=144723 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| || ||||| Sbjct 138396 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 138455 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 138456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 138515 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 138516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150410875055