Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 >seq1 Length=17084797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || |||||||| || || || || || ||| |||| || || |||| || Sbjct 3411894 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCGACCGTCTTC 3411952 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || | ||||||||||| | || | || ||| ||||| Sbjct 3411953 CAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 3412012 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||||| |||||||| || | |||||| | | Sbjct 3412013 GATCTTGGACTTGA-CGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCT 3412071 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || |||||||||||||| Sbjct 3412072 TGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || |||| || ||||| |||| || Sbjct 3412636 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCG 3412695 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| ||||| ||||||||||||||||| | || | | ||| |||||| Sbjct 3412696 AGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 3412755 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | | | | || ||| |||||||| || | |||||| | || Sbjct 3412756 ATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTA 3412815 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||||||||| Sbjct 3412816 CCGGTCAGGGTCTTGACGAAGATTTGCAT 3412844 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || ||| | || || |||| |||||||| Sbjct 3412128 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCAAGCTGC 3412187 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| |||||||||||||| || | ||| | | ||| || ||| ||| | | Sbjct 3412188 TTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCC-TGAATCTT 3412246 Query 39202 TG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || |||| | | | ||||| |||||||| || | |||||| | || || || Sbjct 3412247 TGACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGT 3412306 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || || || ||||| Sbjct 3412307 CAGGGTCTTGACGAAAATCTGCAT 3412330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545039845691