Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=17084797 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| ||||| || || || | Sbjct 3412330 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 3412271 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | ||| ||| || || || ||| | || || ||||| Sbjct 3412270 GATACCATCGACAATGTCAAGTC-AAAGATTCAGGATAAGGAGGGTATCCCCCCGGATCA 3412212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || |||| |||||||| |||| ||||| Sbjct 3412211 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACTTTGAGCGACTACAA 3412152 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||| |||| Sbjct 3412151 CATTCAGAAGGAGAGCACA 3412133 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||||||||| || |||||||| || || || || || Sbjct 1761055 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1761114 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || || || Sbjct 1761115 TCCGACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 1761173 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || || || || || ||||| || | ||||| | |||| || Sbjct 1761174 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGAGCGACTA 1761233 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 1761234 CAACATCCAGAAGGAGTCTAC 1761254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009159214356