Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq47 125 2e-23 >seq1 Length=17084797 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||||||||| || || || || | ||||| |||| | || Sbjct 3412337 ACGAAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 3412396 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || |||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct 3412397 TCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCC 3412456 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| |||||||| || || | ||||| || | Sbjct 3412457 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACCTCGAG 3412516 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 3412517 GGTGATGGTCTTTCCGGT 3412534 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| || || || || |||| ||||| ||| || || Sbjct 1761279 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 1761220 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| | ||| || ||||| || ||||| || Sbjct 1761219 GCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 1761160 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 1761159 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1761100 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 1761099 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1761055 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| || || || |||| ||||| |||| || ||| Sbjct 3412623 ACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 3412682 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || || ||||| ||||| |||||||| || || ||||| || || ||||| Sbjct 3412683 TCGGCCGTCCTCGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACC 3412742 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||||||| ||||||||||| || | ||||| || | Sbjct 3412743 CTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAG 3412802 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| || || | ||| | |||||| Sbjct 3412803 GGTGATAGTCTTACCGGTCAGGGTCTTGACGAAGATTTGCAT 3412844 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| || ||| || || |||| ||||| ||| ||| || Sbjct 3411881 ACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT 3411940 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| ||||||||||| | || || ||||| || ||||| || Sbjct 3411941 GCGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 3412000 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| || |||||||| || || | ||||| || | Sbjct 3412001 CTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGAG 3412060 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || || | || | |||||| Sbjct 3412061 GGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || ||| || || || | ||||| ||| |||||| | || || Sbjct 3412119 AGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCC 3412178 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| |||||||| || || || || || || ||||| ||||| || Sbjct 3412179 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCC 3412238 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| ||| |||||||| || || | ||||| || | ||||| ||| Sbjct 3412239 TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTC 3412298 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 3412299 TTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 >seq47 Length=144723 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || |||| ||||| || |||||||| ||||| ||||| Sbjct 138396 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 138455 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 138456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 138515 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 138516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529565114258