Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq93 185 1e-41 >seq93 Length=305044 Score = 185 bits (204), Expect = 1e-41 Identities = 1186/1879 (63%), Gaps = 52/1879 (3%) Strand=Plus/Plus Query 75373 CAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 ||||| ||||||| ||||| | | ||| | | ||||| ||||||||||| || || | Sbjct 223865 CAACGGTGAACTGGATGGGTGCAGCTGCGGCCTGGGTACGAAGATAGTACATGCCGGTCT 223924 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | ||||| || |||| || ||| |||||||| || | ||| | || || Sbjct 223925 TGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCCT 223984 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || || || |||| ||||| || || |||||||| || | || |||||||| | Sbjct 223985 TCATGTGGATGTTCAGGGACTGGGACTGGTCAATGAAAGCACCACGGTCGGCCGCCATCT 224044 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 | ||| |||| ||| ||||| | || ||| | | | |||||||| || | Sbjct 224045 GGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTACAATGCCTTGATATCCTCGG 224104 Query 75612 GAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 | | || | | || |||||||| ||| |||| ||||| ||||| || ||| Sbjct 224105 GGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATAATACGGTTCTTCATGGCAT 224164 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 | ||| | | ||| | | | || || ||| || |||| || || | Sbjct 224165 CGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGAACT 224224 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 | || | | || | || ||| || || ||| || || || | | ||||||| Sbjct 224225 CGCCGGCAAGGACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 224284 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 | |||| || || | ||| ||||| |||||||| || || | || || || | | Sbjct 224285 TGCCCAGGATCTGGGAAGTGCTGGCAGTTGGCATAGGGGCAACGAGCAAGCTGTTGCGCA 224344 Query 75849 GACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTAC 75906 ||| ||| || |||| | || || ||| | | ||| ||||| | || || || Sbjct 224345 CACC--GTGCTCCTTGATCTGCTCCTTGAGAGAGTCCCACTCCCACAAGTCGGAGGGCTT 224402 Query 75907 AACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTC 75966 |||||||| | ||| |||| || || || | ||| |||||| || ||| || Sbjct 224403 GACATCCCACATGTCGAATTGAAGGATGCCCTCAGATGCAGGTGATCCCTTGAATGATTG 224462 Query 75967 GTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGT 76026 ||| | || || | || | || | ||||| | ||| ||| || ||||| Sbjct 224463 GTAGGGGCCCTCGACCTTGGCAATCTCCATAGAAGCCTCAAGGGCAGCGTGGTAGATTGT 224522 Query 76027 TTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAG 76086 || || |||| ||| || || || | || ||| || |||||||| ||| | | Sbjct 224523 CTCAAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAAGGC--ATGCGCAGG 224580 Query 76087 --AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 || || ||||| || || ||||| || |||| ||| |||||||| || | | | ||| Sbjct 224581 GCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCGATAGGTCTGTGACGCATGTTG 224640 Query 76145 GAAATTTCAG--CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTC 76202 || | | || ||||| |||||| | || | ||| ||||| || || || || | Sbjct 224641 CTG-TTACGGGCCTCCTGGAC-AGGGTAGTGGTTCACATCAATAATCTTGTTCAGGTTAC 224698 Query 76203 TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC----TA-T 76257 |||||| || || || || | || || ||| ||| | || || || | Sbjct 224699 GGACAACCACCTTGGTGACTTCGTGAAGCTTCTTAAAGTCATAGCACCCTTCGTTGTAGT 224758 Query 76258 C-ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGG 76316 | ||| | | || || | ||| || | || || || || ||||||| || || Sbjct 224759 CGACATAGGCAGGGAGGGCCAAAGAGGCCAAGTTGCAGACAGCAACCTCATCAGG---GG 224815 Query 76317 CA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373 || || | || ||||| ||||| || ||| | ||| || || || || | | Sbjct 224816 CACAGTACTCAATAATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTACCCAGGTTCTTCT 224875 Query 76374 GGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCT 76433 |||||||||| ||| || |||||| || || | || || | ||||| || ||| Sbjct 224876 GGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCT 224935 Query 76434 GTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGT-ATCGCTT 76491 | | ||| | || || | ||| | | ||| ||| || || ||| | | | | Sbjct 224936 GGGCTTCCAGGATGGAATACCACA-GCTTCTGAGCGCGGAT---AGTCTTGCGACCACGT 224991 Query 76492 CTCTCTTTCA--TATTGTGTATATAACCGTTCAAATTCATCTCCCCAAA-CA-TCATCCA 76547 | ||| ||| || | ||| || || || || ||| ||| | || ||| | | Sbjct 224992 CCCTCCTTCTCGTACTTCTCATACAAAGCCTCGAACTC--CTCGCCATAGCAGTCAGCAA 225049 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTC-ACCATCTTCCTTAACCCGTTTC 76606 ||||| || || || || ||||| | | ||| || | ||||| | ||| || ||| Sbjct 225050 GGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAACACGCTTC 225108 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || |||||||| || ||||| ||||||| |||| || || | | || || || Sbjct 225109 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAATAAGTCGCGAGCACGGACCTCCTCCTTA 225168 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || ||||| ||||| |||||||| | | ||||| |||||||| || || || Sbjct 225169 CCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAG 225228 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | |||| || || || || || ||||| || | |||||||||||||| || Sbjct 225229 ATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTG 225288 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 | |||| | ||| ||||| || ||||| || ||||| || || || | ||| ||| Sbjct 225289 AAGACTCGAAGCATGGGAATGATACCGTTGGAAGTACCGTTGGTGCCCGCAATGTAAGAA 225348 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 || ||||| || | | ||| || || || ||||| || || || | Sbjct 225349 CCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATGCCGCCAGCCATCTTGGAAATCATG 225408 Query 76907 GCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 ||||| ||| |||| ||||||||||| ||||| || ||||| ||| |||||| || | Sbjct 225409 GCACA-CGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCAACCAA 225467 Query 76966 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 || || ||||| || || || || || || || | || || || || || Sbjct 225468 GAAGCATGAAGACAGCTGGGCCTGCGGGGTACCAGCGTTGAAGAGGGTGGGGGAGGCGTG 225527 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC----CC 77081 ||||| | || || | || | |||||| || | || || || || || Sbjct 225528 GGTGAAGAACTTGCTCGACATGAGGTGGTATGTCTCCAGGACACGCTCAATGTCGTCTCC 225587 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 |||| || ||||| || ||||| | ||| ||||| ||||| || ||| |||| Sbjct 225588 CCAGATG----CCAACAGCCACTCGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGC 225643 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 || | |||| | |||||| |||||||| || || || || || | ||| | Sbjct 225644 CATCAAGCTTCAGGAGGTATGACCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGA 225703 Query 77202 AGTCTCTTTCGTAAATAAT 77220 |||||| || || | ||| Sbjct 225704 AGTCTCGATCATACACAAT 225722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933446450240