Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 seq47 84.2 5e-11 >seq1 Length=17084797 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || |||||||| || ||||||||||| ||| | || | ||||| Sbjct 1761269 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 1761210 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | | ||||||||||| | || || ||||| || Sbjct 1761209 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1761150 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 1761149 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1761090 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| ||||| | |||||| || || Sbjct 1761089 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 1761052 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| |||| | ||||| || || || | Sbjct 3412638 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCGA 3412696 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || |||||||| | ||||||||| | | ||| || ||||| || |||| Sbjct 3412697 GTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAA 3412756 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | |||| || ||| || ||||| || ||||| || | Sbjct 3412757 TCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTAC 3412816 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 3412817 CGGTCAGGGTCTTGACGAAGATTTGCAT 3412844 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||||||||| || || |||||||| |||| | |||| ||||| Sbjct 3412347 AGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCC 3412406 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | || || ||||| || Sbjct 3412407 TCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 3412466 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | | || ||| ||| || || || || || || Sbjct 3412467 TGGATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTC 3412526 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 || || ||||| ||||| |||| Sbjct 3412527 TTTCCGGTGAGGGTCTTGACGA 3412548 >seq47 Length=144723 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | |||| ||||| || || || || || ||||| Sbjct 138396 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 138455 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||||| | || || ||||| || || || || |||||| | || Sbjct 138456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 138515 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || ||||| || || || |||||||| || ||||||||||| Sbjct 138516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819218183797