Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq47 109 4e-19 >seq1 Length=17084797 Score = 143 bits (158), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186 |||| ||| || || |||||| ||||||||||| |||| ||||| || |||| | Sbjct 3412636 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT--CGGCCGTCCT 3412693 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||| | ||||||||| || | ||| | ||| ||||| ||| Sbjct 3412694 CGAGTTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCT 3412753 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | |||||||||| || |||||||| | || || |||| Sbjct 3412754 GAATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCT 3412813 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || |||||||| |||||||||||||||||| Sbjct 3412814 TACCGGTCAGGGTCTTGACGAAGATTTGCATGATG 3412848 Score = 138 bits (152), Expect = 8e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || || |||||| ||||||||||| ||| Sbjct 1761284 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1761225 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || |||||||| |||||||| || | || Sbjct 1761224 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1761165 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 1761164 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 1761107 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || |||||||| |||||||||||||| ||||| || ||||| Sbjct 1761106 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1761058 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||||||||||| ||||||||||| ||| | || | ||| |||| || Sbjct 3411894 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGT-GCGACCGTCTTC 3411952 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || |||||||| |||||||| || | ||| | || ||||| || Sbjct 3411953 CAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 3412012 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | ||||| || | || |||||||| | || || ||||| Sbjct 3412013 GATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCTT 3412072 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || ||||||||||| Sbjct 3412073 GCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||||||||||| || |||||||| ||| | ||| |||| || Sbjct 3412122 ACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCCTCA 3412181 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 3412182 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGA 3412241 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || | || |||||||| | || || |||| Sbjct 3412242 ATCTTTGACTTGACATTGT--CGATGGTATCAGAAGACTCCACCTCGAGGGTGATAGTCT 3412299 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| ||||| || ||||| Sbjct 3412300 TGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| || |||||||| |||| ||| || | || || Sbjct 3412350 ACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 3412409 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||| || | ||| | || ||||| ||| Sbjct 3412410 AGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 3412469 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| || | || |||||||| | || || |||||| Sbjct 3412470 ATCTTGGACTTCACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 3412529 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 3412530 CCGGTGAGGGTCTTGACGA 3412548 >seq47 Length=144723 Score = 109 bits (120), Expect = 4e-19 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || || | || || |||||||| || ||||||| Sbjct 138394 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 138453 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 138454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 138513 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 138514 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 138571 Query 44326 GAA 44328 ||| Sbjct 138572 GAA 138574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989930550019