Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq47 123 2e-23 >seq1 Length=17084797 Score = 143 bits (158), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| |||||| Sbjct 1761284 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1761225 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| |||| ||||| ||||||| |||| Sbjct 1761224 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1761165 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | ||| |||||| ||||||| Sbjct 1761164 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATG--GTGTCGGAAGACTCCA 1761107 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 1761106 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1761055 Score = 127 bits (140), Expect = 2e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || |||||||||||||||||||| |||||| Sbjct 3412104 CCACCACGGAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 3412163 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || ||||||||||| || || || || ||||| || |||| ||| Sbjct 3412164 AAAGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGG 3412223 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||| ||| ||| | |||| ||| || | || | || || |||||| Sbjct 3412224 ATACCCTCCTTATCC-TGAATCTTTGACTTGACATTGTCG--ATGGTATCAGAAGACTCC 3412280 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 3412281 ACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 3412330 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| ||||| |||||||||||||| ||||| |||||| Sbjct 3411875 GCCACCACGAAGGCGAAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 3411934 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || |||||||| || ||||| |||| |||||| ||||| | || Sbjct 3411935 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGAGG 3411994 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| || ||| ||| | | | || || ||||||| Sbjct 3411995 AATGCCCTCCTTGTCTTGGATCTTGGACTT-GACGTTGTCGATGGTATCAGAAGACTCCA 3412053 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| ||||| || || || ||||| Sbjct 3412054 CCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 3412102 Score = 116 bits (128), Expect = 3e-21 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| || || || |||| ||||| |||||||| || || Sbjct 3412653 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCGAGTTGCTTGCCAGCAAA 3412712 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACG 41789 || || ||||| ||||| | || | | |||||||||| ||| | || | ||||| | Sbjct 3412713 GATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC-TGAATCTTGGACTTCA-CA 3412770 Query 41790 ACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | | | |||||| ||||||||||| | || || || ||||| ||||| ||||| Sbjct 3412771 TTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAGGGTCTTG 3412830 Query 41849 ACGAAAATCTGCATG 41863 ||||| || |||||| Sbjct 3412831 ACGAAGATTTGCATG 3412845 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| ||||||||| Sbjct 3412332 CCACCACGAAGACGAAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 3412391 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| || || ||||| ||||| | ||| Sbjct 3412392 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCAGGAGGA 3412451 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||| || | | | || || |||||||| Sbjct 3412452 ATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACATTGTCGATGGTATCAGAAGACTCCAC 3412510 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 3412511 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 3412548 >seq47 Length=144723 Score = 123 bits (136), Expect = 2e-23 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| ||||| || | || |||||||||||||| || || | Sbjct 138394 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 138453 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 138454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 138513 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 138514 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 138571 Query 41851 GAAA 41854 |||| Sbjct 138572 GAAA 138575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303381668400