Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq141 141 2e-28 >seq141 Length=465755 Score = 141 bits (156), Expect = 2e-28 Identities = 322/474 (68%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228 || |||||| |||| || || |||| | || || ||||| || | ||| | || | Sbjct 372509 TCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTAT-CT-TCTTCAGCGGTG 372452 Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 || ||| ||||||| ||||| ||| |||| | |||||||| || | || | Sbjct 372451 CTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 372392 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCA 230346 ||||| ||||| ||| |||||||||||||| || | | || | | || || | || Sbjct 372391 ACGAGCTCATCTCTCGTGACGAGGGTCTCCA-CACCGACTTTGCCTGCCTGCTGCACTCT 372333 Query 230347 AAGCTCCAGAACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 | ||| ||||| || | || ||| | || | ||||| || || || || Sbjct 372332 CACCTCAAGAACCGTGCCAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCG 372274 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGA 230465 || || |||| ||| | || ||| | || || ||| | ||||||||| | | Sbjct 372273 AATTGAGCAGGAATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAA 372214 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| ||||||||||| || || |||||||| | |||| || || || |||| Sbjct 372213 CCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGA 372154 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 ||| | ||||| ||| |||||||||| || |||||| |||||| ||| || || Sbjct 372153 GAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTTGGCGGCAA 372094 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||||||| ||||| ||||| ||| ||||| |||| | ||||||| ||||| Sbjct 372093 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 372040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821329986110