Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq141 109 6e-19 >seq141 Length=465755 Score = 109 bits (120), Expect = 6e-19 Identities = 367/568 (65%), Gaps = 5/568 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||| || || || ||||| | ||| || ||||||||||| || Sbjct 372343 AGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTC 372402 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| ||||| ||||| | |||||| || | ||||| | || ||| Sbjct 372403 AGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAG 372462 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || |||||||| || | ||||| || | | || | || | | || | || | Sbjct 372463 AAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCC 372522 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | ||||| || |||| ||||| || | || ||| || || || ||||| Sbjct 372523 TGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCG 372582 Query 16439 TTAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 || || | | || | ||| | || | || || || || || || | ||| Sbjct 372583 TTGAAGAGGTAGCTGCGCTGGCTGT-TCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTA 372641 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 | || ||||| |||||||| || ||||| || || ||||||||||||||||| | Sbjct 372642 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGG 372701 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 || || || || || || || || |||||||||| || || || |||||| || Sbjct 372702 GATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGC 372761 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATATG 16674 ||||| || |||| ||||| ||||| || || |||||| | | | | | Sbjct 372762 GGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTT 372821 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| || | | ||| ||||| | ||| | ||||| | ||||| ||| ||| | || Sbjct 372822 CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGC 372881 Query 16735 CTTTTTATACATTTTCCAAATATCATTG 16762 ||| || ||||||| ||| || | |||| Sbjct 372882 CTTCTTGTACATTTGCCAGATCTAATTG 372909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413140642040