Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq141 342 5e-89 seq128 140 3e-28 seq131 131 2e-25 seq15 123 3e-23 seq92 120 3e-22 seq77 120 3e-22 seq67 120 3e-22 seq62 120 3e-22 seq3 120 3e-22 >seq141 Length=465755 Score = 342 bits (378), Expect = 5e-89 Identities = 554/793 (70%), Gaps = 17/793 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||| ||| | || ||| Sbjct 372902 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 372843 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 372842 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 372783 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || |||||| |||||||| ||||||||||| ||||||||||| Sbjct 372782 CACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 372723 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 372722 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 372663 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || | || || ||||||||||| ||| | |||| Sbjct 372662 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT------CAAGGAG 372609 Query 116933 GAGA---AGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 | | ||| | | | | || |||||||| ||||| || || ||| || ||||| Sbjct 372608 AACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGAAG 372549 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 ||||| ||||| | |||||| | || | | |||| | | |||||||||| Sbjct 372548 GCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTT 372489 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || ||||||||||| ||||||| || ||| ||| |||| || |||||| Sbjct 372488 GCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGGCTC 372429 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || |||||||| || ||||| || ||||||||||||||| | |||||| Sbjct 372428 AAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 372369 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 ||||| || |||||||||||| ||||| | || | | | || | ||| | Sbjct 372368 GGTCTCCACACCGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCCAGCAAG 372309 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | || | || ||| |||| || || ||| || |||||| ||| | ||||| Sbjct 372308 GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAG 372249 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || || || |||| ||||| || | || | | | |||| ||| ||||||||||| Sbjct 372248 GCTCT-CCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAGTT 372190 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 || |||||| | ||||| ||| || | | || ||| |||||| | ||||||| Sbjct 372189 TGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCCAACCC 372130 Query 117406 GCTGGACTTTATG 117418 | ||||| ||| Sbjct 372129 CTTTGACTTCATG 372117 >seq128 Length=1745744 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 1611546 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1611487 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||| ||| ||||| Sbjct 1611486 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1611427 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||| | |||| ||| || || |||||||| || | || |||||| ||||||| Sbjct 1611426 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 1611367 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || || || ||||| || | || || Sbjct 1611366 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1611317 >seq131 Length=1298602 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| |||| || ||| | || Sbjct 570681 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 570622 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| || ||||| || | ||||| Sbjct 570621 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCA 570563 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| |||| |||||| | | ||||||||| Sbjct 570562 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 570503 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 570502 CATCCAGAAGGAGAGCACACTGCA 570479 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| |||||||| | || || ||| | | Sbjct 570909 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 570850 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| ||| |||| ||||| ||||| || ||| |||| ||| Sbjct 570849 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 570790 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || |||| |||||| | | |||||||||| Sbjct 570789 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGCGACTACAAC 570730 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| ||| || || || || Sbjct 570729 ATTCAGAAGGAGAGCACACTTCACCTTGT 570701 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 571423 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 571364 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| |||||||| || | |||||| Sbjct 571363 GATACCATCGACAATGTGAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 571304 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| || || || || | || || || |||||||||| Sbjct 571303 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 571244 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 571243 ATCCAGAAGGAGTCCACCCTCCACCTGGT 571215 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| || || ||||||||| |||| || || | | || | | | Sbjct 571127 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 571068 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| ||||| | |||||||| ||||| Sbjct 571067 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGACTG 571009 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || |||||| ||||||||||||||||||| Sbjct 571008 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 570949 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || |||| || || || || Sbjct 570948 GAATCCACTCTCCACCTTGT 570929 >seq15 Length=381730 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 261811 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 261752 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 261751 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 261692 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 261691 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 261632 Query 40879 G 40879 | Sbjct 261631 G 261631 >seq92 Length=352844 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || ||||| || || ||||| |||| || |||||| || | || ||| | || Sbjct 5589 ATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCC 5648 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| |||||||||| |||| ||| | ||||| Sbjct 5649 GACACCATCGACAACG-TCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCA 5707 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || |||||||| |||| | |||| | | ||||| ||| Sbjct 5708 GCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTGCAA 5767 Query 40869 CATCCAGAAGGAG 40881 |||||||||| || Sbjct 5768 CATCCAGAAGAAG 5780 >seq77 Length=352580 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || ||||| || || ||||| |||| || |||||| || | || ||| | || Sbjct 348879 ATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCC 348820 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| |||||||||| |||| ||| | ||||| Sbjct 348819 GACACCATCGACAACG-TCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCA 348761 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || |||||||| |||| | |||| | | ||||| ||| Sbjct 348760 GCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTGCAA 348701 Query 40869 CATCCAGAAGGAG 40881 |||||||||| || Sbjct 348700 CATCCAGAAGAAG 348688 >seq67 Length=351041 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || ||||| || || ||||| |||| || |||||| || | || ||| | || Sbjct 347256 ATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCC 347197 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| |||||||||| |||| ||| | ||||| Sbjct 347196 GACACCATCGACAACG-TCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCA 347138 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || |||||||| |||| | |||| | | ||||| ||| Sbjct 347137 GCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTGCAA 347078 Query 40869 CATCCAGAAGGAG 40881 |||||||||| || Sbjct 347077 CATCCAGAAGAAG 347065 >seq62 Length=351717 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || ||||| || || ||||| |||| || |||||| || | || ||| | || Sbjct 347256 ATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCC 347197 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| |||||||||| |||| ||| | ||||| Sbjct 347196 GACACCATCGACAACG-TCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCA 347138 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || |||||||| |||| | |||| | | ||||| ||| Sbjct 347137 GCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTGCAA 347078 Query 40869 CATCCAGAAGGAG 40881 |||||||||| || Sbjct 347077 CATCCAGAAGAAG 347065 >seq3 Length=1872122 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || ||||| || || ||||| |||| || |||||| || | || ||| | || Sbjct 1868421 ATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAATCTTCC 1868362 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| |||||||||| |||| ||| | ||||| Sbjct 1868361 GACACCATCGACAACG-TCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTGACCA 1868303 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || |||||||| |||| | |||| | | ||||| ||| Sbjct 1868302 GCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTGCAA 1868243 Query 40869 CATCCAGAAGGAG 40881 |||||||||| || Sbjct 1868242 CATCCAGAAGAAG 1868230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217931272720