Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 1e-12 >seq7 Length=2436850 Score = 89.7 bits (98), Expect = 1e-12 Identities = 276/421 (66%), Gaps = 7/421 (2%) Strand=Plus/Plus Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817 ||||| | | |||| | | | ||| ||| ||| |||| ||||| ||| || | Sbjct 486230 GTCATGCGGCACAAGGAGGAGCTC---GACTCCGCCATTGTCTACGATCGAGACTTCAAC 486286 Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||| | ||||| || ||||| ||| || ||||| || ||||||||||| Sbjct 486287 TACCAATACTTCGGCTTCAAGACTTTGGAGCGATCATACCTCCTGAAGCTTGATGGCAAG 486346 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 || || || || ||||||||| | ||||||||| |||| || || || ||| Sbjct 486347 ATTGTTGAGCGGCCACAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGAC 486406 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT-GAACGCTGGATGACACATGCCAC 248996 || ||| | || || ||||| |||| | ||| | | | | | | || |||||| | Sbjct 486407 ATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAG-TTCTTCACCCATGCCTC 486465 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || || || ||||| || |||||| | |||||| ||| ||||| | | | Sbjct 486466 CCCCACCCTGTTCAATGCTGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGA 486525 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTT 249115 |||| | ||||| | || || || |||||||| || || ||| || | ||||| Sbjct 486526 CATGAAGGACGATAGCATTGAGGGTATCTATGACACTCTGAAGACA-TGTGCCATGATTT 486584 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 | || | || || || ||||| | |||| | |||||| || | || || |||| Sbjct 486585 CCAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACA 486644 Query 249176 T 249176 | Sbjct 486645 T 486645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763689746496