Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 324 1e-83 seq141 214 2e-50 seq131 123 2e-23 seq128 93.3 4e-14 >seq7 Length=2436850 Score = 324 bits (358), Expect = 1e-83 Identities = 1131/1746 (65%), Gaps = 38/1746 (2%) Strand=Plus/Minus Query 22247 GACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCAT 22305 ||||| |||||| || || || || ||||| || ||||| | | |||| | ||| Sbjct 487983 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CAATTTGGCGCTG 487925 Query 22306 CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCT 22365 || || ||||| ||||||||||| || | |||| ||| || || ||| | Sbjct 487924 AGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATGTTGGGGATGTT 487865 Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| || || | ||||| || || || | |||| ||| | ||| | Sbjct 487864 CTGAATGGAGCCATTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGT 487805 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | || || || |||| || |||| || || || |||||||||| | ||| || Sbjct 487804 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 487745 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 || ||||| |||||||| ||| | || ||||| | || ||||| ||||| ||||| | Sbjct 487744 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 487685 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAA 22603 || || || ||||| || || | || | ||| | | ||||||| |||| Sbjct 487684 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA- 487626 Query 22604 ATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662 | | ||| |||||| ||| |||||||| || || ||| | |||| ||||||| Sbjct 487625 --TCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGCTTGACAT---CCCACAT 487571 Query 22663 ATCGTATTGCAACACGCCG-CGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACCA 22720 ||| |||| | | ||| || | || || | | |||| | | | |||||| ||||| Sbjct 487570 GTCGAATTGGAGGATGCCCTCGGAT-GCAGGTGATCCCTT-GAATGATTCGTAGGGACCC 487513 Query 22721 TATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATT 22780 | | | ||| | || ||||| | || | | || || ||||| ||||| Sbjct 487512 TCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATC 487453 Query 22781 TTCTTGTTCAATT--CG-GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAAC 22837 | |||||||| | || || ||| || || | | ||||| |||| | ||| Sbjct 487452 TGCTTGTTCAGCTGACGAGCCTCGG-GAGACT--CAAAGGGCATGCGCAGGGCAAGGAAA 487396 Query 22838 GCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT 22897 ||||| || | |||||| || || | ||| || ||||||| || || || || Sbjct 487395 GCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTG----CTGTT 487340 Query 22898 GC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || ||| | | ||| || || ||| || | |||| | ||| | | || Sbjct 487339 GCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAAC 487280 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAA 23009 | || || | | ||||||||| ||| || ||||| | ||| Sbjct 487279 CACCTTGGTGACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCG-TTGTAGTCGACAT 487221 Query 23010 ACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACT 23069 | || ||| | ||||| | ||||| || || ||||| ||| || ||||| Sbjct 487220 AAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGGGCACAGTACT 487161 Query 23070 CTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129 | | ||| ||||| || || ||| | || || |||| || |||||||||| | Sbjct 487160 CGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCT 487101 Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189 | || ||||| | |||||||||||||||| | || | || || ||| ||| | || | Sbjct 487100 TGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTTTCGGTCTGGGCTTCCA 487041 Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTC 23247 ||| | ||||| ||||||| | | ||| || || | ||| |||| || Sbjct 487040 GGATGGAATACCACAGCTTCTGAGCACGGATG-GTCTTGCGACCACGTCCCTCCTTC-TC 486983 Query 23248 GTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTG 23307 |||||| | |||| || || ||||| | || || ||||| || ||||| || ||| Sbjct 486982 GTACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTC 486923 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367 | || |||||||| |||| ||| || ||||| || |||| || ||||| || Sbjct 486922 GTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGG 486863 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 ||||| ||||| ||||| ||||| ||||| ||||| || |||||| |||||| Sbjct 486862 AATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCG 486803 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | ||| | || || || ||||| || ||||| ||||||||||| | |||||| || || Sbjct 486802 GAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACC 486743 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 || | ||| || || ||||| ||||| || | ||| ||||||||| | |||| ||||| Sbjct 486742 AGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTGTTGTTGAAGACTCGAAGCAT 486683 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || | | ||||||||| | ||| ||| || | || || | || || | Sbjct 486682 GGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGAT 486623 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 | ||| |||| || || || || || || || || ||||| || ||| ||||| Sbjct 486622 GCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAG 486563 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||| ||||| ||||| ||||| || || || | |||||||||| || || |||| Sbjct 486562 AGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAG 486503 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || || | || ||| | || |||||| || ||| ||| || || ||| | | Sbjct 486502 CTGGGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCT 486443 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| || ||||| || || | | | |||||||| ||||| || || | | Sbjct 486442 AGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGA 486383 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 || ||||| ||||||| || || | ||| || | ||| | || || | || || Sbjct 486382 CACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGGAGGTA 486323 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967 ||| || | || || || || || || || | ||||| ||||| ||||||| || || Sbjct 486322 TGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 486263 Query 23968 GGCCGA 23973 ||| || Sbjct 486262 GGCGGA 486257 >seq141 Length=465755 Score = 214 bits (236), Expect = 2e-50 Identities = 555/838 (66%), Gaps = 25/838 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| |||||| | || ||| Sbjct 372902 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 372843 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683 || ||||||||| ||| ||| | || | || || ||| ||||| | || || Sbjct 372842 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 372786 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || ||||| || || || ||||| |||||||| ||||||| Sbjct 372785 TCTCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAG 372726 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | || || || || | | ||||| ||||||| ||||| || || | Sbjct 372725 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 372666 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || |||||||| || ||| | ||||| ||| Sbjct 372665 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 372606 Query 57864 GACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 | || || || || |||||||| || || || || || ||| ||||||| Sbjct 372605 AGCCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGAAG 372549 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || || ||| | ||||| ||||| | | | | | || ||| || | || | Sbjct 372548 GCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTT 372489 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || ||||||||||| ||||| ||||| || ||||| | || || ||| | Sbjct 372488 GCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGGCTC 372429 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || || ||||| || ||||| ||| ||||||| | || || || |||||| Sbjct 372428 AAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 372369 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CGACG 58157 |||||||| || || ||||| ||||| || |||||||| |||| || | | | Sbjct 372368 GGTCTCCACACCGACTTTGCCTGCCTGCTGCACTCTCAC---CTCAAGAACCGTGCCAGC 372312 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 ||| ||| ||||| ||||| || || ||| || || | || || | ||| Sbjct 372311 AAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAATTCTTGACC 372252 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || ||| ||||||| |||||| | ||||| ||||||| ||| Sbjct 372251 GAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAG 372192 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAA 58335 |||||||||||| | || | ||| || | |||| || ||||| | | Sbjct 372191 TTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATC--TACAAGTCTGCCA 372134 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | || ||||| || ||| | || || || | |||||||| ||||||||||| || Sbjct 372133 ACCCCTTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAA 372076 >seq131 Length=1298602 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || |||||| |||| || ||| | ||| Sbjct 570681 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 570622 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || |||||| Sbjct 570621 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 570562 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| |||||||| | || ||||||| || ||| Sbjct 570561 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 570502 Query 31373 ATTCAAAAAGA 31383 || || || || Sbjct 570501 ATCCAGAAGGA 570491 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| | || |||||| | || Sbjct 570909 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 570850 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| || | || || || || Sbjct 570849 GACACCATCGACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGTATTCCCCCGGATCA 570791 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || ||| | || ||||||| || || Sbjct 570790 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGCGACTACAA 570731 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || ||||| || || || Sbjct 570730 CATTCAGAAGGAGAGCACACTTCACCTTGTCCT 570698 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 571424 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 571365 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 571364 CGATACCATCGACAATGTGAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 571305 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| || | || || ||| || ||| || || Sbjct 571304 GCAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 571245 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 571244 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 571212 >seq128 Length=1745744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 1611546 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1611487 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 1611486 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1611427 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| |||| || || | ||| || Sbjct 1611426 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 1611367 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 1611366 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 1611316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765302300240