Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq141 152 1e-31 seq7 131 3e-25 >seq141 Length=465755 Score = 152 bits (168), Expect = 1e-31 Identities = 300/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| || || ||||| |||||| Sbjct 372491 GTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGG 372432 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | ||| Sbjct 372431 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 372372 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || ||||||||| ||| ||||| | | || ||| Sbjct 372371 GAGGGTCTCCACACCGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGTG 372317 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || ||| | ||| || ||||||| || ||||||||||| || ||||| Sbjct 372316 CCAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAATTC 372258 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || || | | || ||||||| ||| |||||| |||||| Sbjct 372257 TTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTAC 372198 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 || || ||||| || || || | || | | || || ||| ||| || | Sbjct 372197 ATCGAGTTTGTTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCT 372138 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| |||||||| || ||||| || | |||||||||||||| || Sbjct 372137 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAG 372078 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 372077 AAGCGCGTCGCCGACTACCA 372058 >seq7 Length=2436850 Score = 131 bits (144), Expect = 3e-25 Identities = 186/259 (72%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844 ||||| || ||||| ||||||| || || || ||| ||||| ||||| ||||| Sbjct 486607 GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACC 486548 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTG 94903 |||||||||||| || | | | | | | |||||| ||||| || |||| || | | Sbjct 486547 CTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGG-G 486489 Query 94904 TTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCAT 94963 | ||| ||| ||||| |||||||| |||||||| || | | || |||||||| | | Sbjct 486488 TACCAGCATTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGT 486429 Query 94964 ATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 |||| || | |||| | ||||| ||| ||||| |||| ||| |||||||||| Sbjct 486428 ATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCA 486369 Query 95024 TGTCCTGAGGGCGCTCAAC 95042 ||| ||| || |||||||| Sbjct 486368 TGTGCTGTGGCCGCTCAAC 486350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581502228135