Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq92 98.7 8e-16 seq77 98.7 8e-16 seq67 98.7 8e-16 seq62 98.7 8e-16 seq3 98.7 8e-16 >seq92 Length=352844 Score = 98.7 bits (108), Expect = 8e-16 Identities = 203/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Minus Query 20808 TGGGGGTCGTAGCCCTCGAG-ACTCAGATCCGCGCGCGTAAAGTCCTCCAGACGC-GCCA 20865 |||||||||||||||| || || || ||| || | | || | || || || ||| Sbjct 268284 TGGGGGTCGTAGCCCTTGACCACGAAG-TCCTCGACCTTCCAGCCATC--GATGCTGCCG 268228 Query 20866 CCTTTCTCAA----AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGC 20921 |||||||| ||||| |||| || ||||| || || | | |||||| | Sbjct 268227 CCTTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTC 268168 Query 20922 AGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCA--AGGTGTGCACAAAGT 20979 || | || | ||||| | |||| ||||| ||||| |||| | ||| | | || Sbjct 268167 TTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTA---AGG 268111 Query 20980 CTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCG 21038 || ||||| | ||| | |||||||||| || | || || || || ||||||||| Sbjct 268110 CTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCG 268051 Query 21039 ATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || |||| || |||||||||||| ||||| |||||| ||||||||| Sbjct 268050 ATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 267997 >seq77 Length=352580 Score = 98.7 bits (108), Expect = 8e-16 Identities = 203/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 20808 TGGGGGTCGTAGCCCTCGAG-ACTCAGATCCGCGCGCGTAAAGTCCTCCAGACGC-GCCA 20865 |||||||||||||||| || || || ||| || | | || | || || || ||| Sbjct 86184 TGGGGGTCGTAGCCCTTGACCACGAAG-TCCTCGACCTTCCAGCCATC--GATGCTGCCG 86240 Query 20866 CCTTTCTCAA----AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGC 20921 |||||||| ||||| |||| || ||||| || || | | |||||| | Sbjct 86241 CCTTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTC 86300 Query 20922 AGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCA--AGGTGTGCACAAAGT 20979 || | || | ||||| | |||| ||||| ||||| |||| | ||| | | || Sbjct 86301 TTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTA---AGG 86357 Query 20980 CTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCG 21038 || ||||| | ||| | |||||||||| || | || || || || ||||||||| Sbjct 86358 CTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCG 86417 Query 21039 ATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || |||| || |||||||||||| ||||| |||||| ||||||||| Sbjct 86418 ATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 86471 >seq67 Length=351041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 203/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 20808 TGGGGGTCGTAGCCCTCGAG-ACTCAGATCCGCGCGCGTAAAGTCCTCCAGACGC-GCCA 20865 |||||||||||||||| || || || ||| || | | || | || || || ||| Sbjct 84561 TGGGGGTCGTAGCCCTTGACCACGAAG-TCCTCGACCTTCCAGCCATC--GATGCTGCCG 84617 Query 20866 CCTTTCTCAA----AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGC 20921 |||||||| ||||| |||| || ||||| || || | | |||||| | Sbjct 84618 CCTTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTC 84677 Query 20922 AGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCA--AGGTGTGCACAAAGT 20979 || | || | ||||| | |||| ||||| ||||| |||| | ||| | | || Sbjct 84678 TTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTA---AGG 84734 Query 20980 CTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCG 21038 || ||||| | ||| | |||||||||| || | || || || || ||||||||| Sbjct 84735 CTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCG 84794 Query 21039 ATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || |||| || |||||||||||| ||||| |||||| ||||||||| Sbjct 84795 ATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 84848 >seq62 Length=351717 Score = 98.7 bits (108), Expect = 8e-16 Identities = 203/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 20808 TGGGGGTCGTAGCCCTCGAG-ACTCAGATCCGCGCGCGTAAAGTCCTCCAGACGC-GCCA 20865 |||||||||||||||| || || || ||| || | | || | || || || ||| Sbjct 84561 TGGGGGTCGTAGCCCTTGACCACGAAG-TCCTCGACCTTCCAGCCATC--GATGCTGCCG 84617 Query 20866 CCTTTCTCAA----AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGC 20921 |||||||| ||||| |||| || ||||| || || | | |||||| | Sbjct 84618 CCTTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTC 84677 Query 20922 AGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCA--AGGTGTGCACAAAGT 20979 || | || | ||||| | |||| ||||| ||||| |||| | ||| | | || Sbjct 84678 TTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTA---AGG 84734 Query 20980 CTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCG 21038 || ||||| | ||| | |||||||||| || | || || || || ||||||||| Sbjct 84735 CTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCG 84794 Query 21039 ATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || |||| || |||||||||||| ||||| |||||| ||||||||| Sbjct 84795 ATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 84848 >seq3 Length=1872122 Score = 98.7 bits (108), Expect = 8e-16 Identities = 203/294 (69%), Gaps = 15/294 (5%) Strand=Plus/Plus Query 20808 TGGGGGTCGTAGCCCTCGAG-ACTCAGATCCGCGCGCGTAAAGTCCTCCAGACGC-GCCA 20865 |||||||||||||||| || || || ||| || | | || | || || || ||| Sbjct 1605726 TGGGGGTCGTAGCCCTTGACCACGAAG-TCCTCGACCTTCCAGCCATC--GATGCTGCCG 1605782 Query 20866 CCTTTCTCAA----AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGC 20921 |||||||| ||||| |||| || ||||| || || | | |||||| | Sbjct 1605783 CCTTTCTCCCGCGTAATCTCCAGCTCAGGGAACGGCCGAGGCTCGCGCTCCAGCTGTGTC 1605842 Query 20922 AGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCA--AGGTGTGCACAAAGT 20979 || | || | ||||| | |||| ||||| ||||| |||| | ||| | | || Sbjct 1605843 TTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATAACGTGGGTA---AGG 1605899 Query 20980 CTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCG 21038 || ||||| | ||| | |||||||||| || | || || || || ||||||||| Sbjct 1605900 CTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTTAGCAGCGCATAGCTGGCG 1605959 Query 21039 ATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || |||| || |||||||||||| ||||| |||||| ||||||||| Sbjct 1605960 ATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 1606013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774972936560