Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq141 158 2e-33 seq7 134 2e-26 >seq141 Length=465755 Score = 158 bits (174), Expect = 2e-33 Identities = 371/557 (67%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||||||||| | | || || ||||||||||| || || Sbjct 372346 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 372405 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || ||||| || ||||| ||||| | || |||||| Sbjct 372406 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAG 372465 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGT 50136 || || || || |||||||||||||| || | || || || | |||| || Sbjct 372466 ATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 372525 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 372526 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTG 372585 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| | | | | || || | || || ||||| | || || | Sbjct 372586 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 372645 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || |||||||| |||| |||||||| ||| Sbjct 372646 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 372705 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | || || || | | || || || || || |||||| ||| ||| Sbjct 372706 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCA 372765 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAA 50433 || || |||| | || || || | || |||| | | | | || ||||| Sbjct 372766 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 372825 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 372826 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTC 372885 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 372886 TTGTACATTTGCCAGAT 372902 >seq7 Length=2436850 Score = 134 bits (148), Expect = 2e-26 Identities = 451/698 (65%), Gaps = 12/698 (2%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| ||||||| || ||||| | || ||| || | | || || || ||||| Sbjct 486933 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 486874 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| |||||||| ||||| | || | || | | | ||| || || || Sbjct 486873 AAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 486814 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| ||||| ||||| | | | || | ||||| || || | ||| ||| Sbjct 486813 TGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 486754 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||||| || ||||| || | Sbjct 486753 GCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTGTTGTTGAAG 486694 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| | ||| ||||||||||| ||||| ||||| ||||| || | || || || Sbjct 486693 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 486634 Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 ||||||| || | || | || || || || || ||||| || || || | | Sbjct 486633 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGG 486576 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | ||| || | || |||||||| ||||| |||||||| || |||||| | | | Sbjct 486575 CACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGA 486516 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | || |||| ||| | || || ||||| || | ||| || || || || | Sbjct 486515 AGCATGAGGACAGCTGGGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCATGGG 486456 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCAT 80424 | || | || ||||| || ||||| ||||| | | || || || || Sbjct 486455 TGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCC 486396 Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTA 80484 |||| || || | || ||||| | ||||||||| || | ||||| |||||| | Sbjct 486395 AGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCA 486340 Query 80485 TTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 80544 | | |||| | ||| ||| |||||||| || || || || || | ||| ||| Sbjct 486339 TCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAG 486280 Query 80545 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||||| ||||| | ||| | |||| ||| | ||||| Sbjct 486279 TCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 486242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267031263080