Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq141 134 2e-26 seq7 118 1e-21 >seq141 Length=465755 Score = 134 bits (148), Expect = 2e-26 Identities = 366/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | | || | ||||||||||| || || Sbjct 372346 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 372405 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || ||||| || ||||| || || || ||||| | || |||||| Sbjct 372406 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAG 372465 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGT 42241 || || || || || |||||||||| || | || || || | |||| || Sbjct 372466 ATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 372525 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||| ||||||||||| | ||||| || || || ||||| || Sbjct 372526 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTG 372585 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| ||| | | | | || || | || || ||||| | || || | Sbjct 372586 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 372645 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||||||| | | Sbjct 372646 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 372705 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | || || || | | || ||||| || || |||||| ||| ||| Sbjct 372706 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCA 372765 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCA 42537 || || |||| | || || || || || |||| | ||| | || ||||| Sbjct 372766 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCA 372824 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | ||| || || | ||| | ||||| | ||||| || || || || ||||| Sbjct 372825 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTT 372884 Query 42598 TTTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 372885 CTTGTACATTTGCCAGAT 372902 >seq7 Length=2436850 Score = 118 bits (130), Expect = 1e-21 Identities = 450/700 (64%), Gaps = 16/700 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 ||||| ||||| || || ||||| | | ||| || || || | | || || |||| Sbjct 486933 CCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTC--CAAGTTCTTCTCAACACGCTTCA 486876 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | |||||||| |||||||| ||||| | || | || | | | ||| || || | Sbjct 486875 TGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGC 486816 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||||| ||||| ||||| | | | || | ||||| || || | ||| | Sbjct 486815 CGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGA 486756 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | || || || ||||| || ||||| || | ||||| || ||||| || Sbjct 486755 TGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTGTTGTTGA 486696 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | |||| | ||| ||||||||||| ||||| | ||| ||||| || | || || | Sbjct 486695 AGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGC 486636 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||||||| || || || | || || || || || ||||| || || || | Sbjct 486635 CGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCAT 486578 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || ||| || | || |||||||| ||||| || ||||| ||| |||||| | | Sbjct 486577 GGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAA 486518 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || |||| ||| | || || ||||| || | ||| || || || || Sbjct 486517 GAAGCATGAGGACAGCTGGGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCATG 486458 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CC 72505 || || | || ||||| || ||||| ||||| | | || || || || Sbjct 486457 GGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCC 486398 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 |||| || || | || ||||| | ||| ||||| || | ||||| |||||| Sbjct 486397 CCAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGC 486342 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 || | |||| | ||| ||| |||||||| || || || || || | ||| | Sbjct 486341 CATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGA 486282 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 ||||||| ||||| | ||| | || | ||| | ||||| Sbjct 486281 AGTCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 486242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137547319720