Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq141 279 8e-70 seq7 143 4e-29 >seq141 Length=465755 Score = 279 bits (308), Expect = 8e-70 Identities = 580/851 (68%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||||||||| ||||| | ||||||| | |||||| Sbjct 372902 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 372843 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| ||||| || || Sbjct 372842 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 372787 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||||| ||| || || || |||||||| || ||| | Sbjct 372786 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGA 372727 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 372726 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATCA 372668 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC--GCGA 125311 |||| |||||| | ||||| || | ||||| || || |||| ||||| | || Sbjct 372667 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 372608 Query 125312 TCCGCAA-CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | || | || | || ||||| ||||| || || || | || | || || || | Sbjct 372607 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGA 372551 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || ||||||| | ||| | || ||||| | ||| | | |||| Sbjct 372550 AGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 372491 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| ||||| |||||||| ||| |||||| ||||||| |||| Sbjct 372490 TTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGGC 372431 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| |||| Sbjct 372430 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 372371 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| ||||||||| || ||| ||| | | | | || | Sbjct 372370 AGGGTCTCCACACCGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 372320 Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | | |||| ||| |||| | || ||||| || | || || || | Sbjct 372319 GTGCCAGCAAGG---AGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGG 372263 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 | || | ||||| | || || | | || | |||||||||| ||| || ||| Sbjct 372262 AATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGC 372203 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| |||||||| || || ||||| || || | ||| || ||||| | Sbjct 372202 AGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCG---CTCTCGGCAACGAGAAGATCT 372146 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| | || |||||||| |||||| | ||| || || | || |||||||||| Sbjct 372145 ACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 372086 Query 125845 TTTTCGAGAAG 125855 ||||||||||| Sbjct 372085 TTTTCGAGAAG 372075 >seq7 Length=2436850 Score = 143 bits (158), Expect = 4e-29 Identities = 305/448 (68%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 486722 CAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGAC 486781 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | ||||| ||| ||| ||||||| || || | ||| Sbjct 486782 GTCTTTGAATTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGAC 486841 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053 ||||| ||| |||||| | || ||| | ||||||||||| || | || ||| Sbjct 486842 TTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACTTGG-- 486899 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 |||||| || ||||||||| || | || || || | || |||| ||||| || | Sbjct 486900 ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAAT 486959 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCA 97172 | ||||| ||| | |||||| | ||||| || || |||| | || ||| Sbjct 486960 TCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGACGTGGTCGCAAGACCA-TCCGTGCT 487018 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| |||||| | ||||| || || ||| || ||||| | || | ||| || Sbjct 487019 C-AGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAAACTGGTAACCCCTTCATGCT 487077 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| || || ||||| |||||||| || |||| |||||| |||| Sbjct 487078 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAGCTC 487137 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| || ||||| || ||| | |||||| Sbjct 487138 CAACCTCTGCACCGAGATTATCGAGTAC 487165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057375141720