Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq92 95.1 8e-15 seq77 95.1 8e-15 seq67 95.1 8e-15 seq62 95.1 8e-15 seq3 95.1 8e-15 >seq92 Length=352844 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 268188 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 268129 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 |||| | |||| || ||| || |||| || |||| ||| | ||||| || Sbjct 268128 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 268069 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || |||||||||||||| ||||| | || | ||||||| | | |||| ||| Sbjct 268068 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGT-CGCAGGACCGCTG 268010 Query 25581 GTAGAGCTGACA 25592 ||||||||| || Sbjct 268009 GTAGAGCTGGCA 267998 >seq77 Length=352580 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 86280 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 86339 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 |||| | |||| || ||| || |||| || |||| ||| | ||||| || Sbjct 86340 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 86399 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || |||||||||||||| ||||| | || | ||||||| | | |||| ||| Sbjct 86400 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGT-CGCAGGACCGCTG 86458 Query 25581 GTAGAGCTGACA 25592 ||||||||| || Sbjct 86459 GTAGAGCTGGCA 86470 >seq67 Length=351041 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 84657 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 84716 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 |||| | |||| || ||| || |||| || |||| ||| | ||||| || Sbjct 84717 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 84776 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || |||||||||||||| ||||| | || | ||||||| | | |||| ||| Sbjct 84777 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGT-CGCAGGACCGCTG 84835 Query 25581 GTAGAGCTGACA 25592 ||||||||| || Sbjct 84836 GTAGAGCTGGCA 84847 >seq62 Length=351717 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 84657 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 84716 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 |||| | |||| || ||| || |||| || |||| ||| | ||||| || Sbjct 84717 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 84776 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || |||||||||||||| ||||| | || | ||||||| | | |||| ||| Sbjct 84777 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGT-CGCAGGACCGCTG 84835 Query 25581 GTAGAGCTGACA 25592 ||||||||| || Sbjct 84836 GTAGAGCTGGCA 84847 >seq3 Length=1872122 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCT 25460 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 1605822 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 1605881 Query 25461 CCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG 25520 |||| | |||| || ||| || |||| || |||| ||| | ||||| || Sbjct 1605882 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 1605941 Query 25521 AGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTG 25580 || || |||||||||||||| ||||| | || | ||||||| | | |||| ||| Sbjct 1605942 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGT-CGCAGGACCGCTG 1606000 Query 25581 GTAGAGCTGACA 25592 ||||||||| || Sbjct 1606001 GTAGAGCTGGCA 1606012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136783350881