Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq131 105 6e-18 seq128 93.3 4e-14 >seq131 Length=1298602 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || |||||||||||||| || |||||||| || ||| || |||| ||| Sbjct 570473 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 570532 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | | || || |||||||| || || | | |||||||||| | Sbjct 570533 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGA 570592 Query 48638 ATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || ||||| |||| ||| ||| ||||| || || || | Sbjct 570593 ATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCT 570650 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || ||||| || || ||||||||||| Sbjct 570651 TGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||||||||||| ||||||||||| || ||| || ||||||| |||||| Sbjct 570707 TGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGC 570766 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||||||| || | || ||||||||| ||| || Sbjct 570767 TTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTT 570826 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | || || ||| | ||| ||||| || ||||| Sbjct 570827 GACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 570886 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| Sbjct 570887 AACGTCTTGACGAAGATCTGCAT 570909 >seq128 Length=1745744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | ||| | ||||||||||||||||| || | Sbjct 1611352 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 1611411 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 1611412 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 1611471 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||||| ||| | || || || || || ||||| || || || Sbjct 1611472 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 1611531 Query 48715 AAAAATCTGCATCGTGTCT 48733 |||||||||||| || || Sbjct 1611532 GAAAATCTGCATCTTGCCT 1611550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250188602197