Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq141 149 8e-31 seq7 125 9e-24 >seq141 Length=465755 Score = 149 bits (164), Expect = 8e-31 Identities = 370/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | | || | ||||||||||| || || Sbjct 372346 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGA 372405 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || ||||| || ||||| || ||||| ||||| | || ||||| Sbjct 372406 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAG 372465 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 32837 || || || || || |||||||||| || | || || || | |||| || Sbjct 372466 ATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 372525 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| ||||| ||||||||||| | ||||| || ||||| || || || Sbjct 372526 ATCCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTG 372585 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| ||| | | | | || || | || || || || | || || | Sbjct 372586 AAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTC 372645 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || || || || ||||||||||||| |||||||| ||| Sbjct 372646 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 372705 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || || || | | || || || || || |||||| ||| ||| Sbjct 372706 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCA 372765 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 33133 || || |||| | || || || || || ||||| | || | | | || ||||| Sbjct 372766 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 372824 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 372825 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTT 372884 Query 33194 TTTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 372885 CTTGTACATTTGCCAGAT 372902 >seq7 Length=2436850 Score = 125 bits (138), Expect = 9e-24 Identities = 451/701 (64%), Gaps = 12/701 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| ||||| | || ||||| | || ||| || || | || || || ||| Sbjct 486936 AGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTC 486877 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| |||||||| ||||| | || | || | | | || || || Sbjct 486876 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTG 486817 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| ||||| ||||| | | | || | ||||| || || | ||| Sbjct 486816 CCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAG 486757 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | ||||| || ||||| || ||||| || | ||||| || ||||| || Sbjct 486756 ATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTGTTGTTG 486697 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | |||| | ||| ||||||||||| ||||| ||||| ||||| || | || || Sbjct 486696 AAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAG 486637 Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| || | || | || || || || || ||||| || || || | Sbjct 486636 CCGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCA 486579 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || ||| || | || |||||||| ||||| || ||||| ||| |||||| | | Sbjct 486578 TGGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCA 486519 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 || || |||| ||| | || || ||||| || | ||| || || || | Sbjct 486518 AGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCAT 486459 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----C 63553 | || || | || ||| | || ||||| ||||| | | || || || | Sbjct 486458 GGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTC 486399 Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 | |||| || || | || ||||| | ||||||||| || | ||||| |||||| Sbjct 486398 CCCAGATG----CCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTG 486343 Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673 | | |||| | ||| ||| |||||||| || || || || || | ||| Sbjct 486342 CCATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTG 486283 Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 |||||||| ||||| | ||| | |||| ||| | ||||| Sbjct 486282 AAGTCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 486242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630439681200