Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq141 190 2e-43 >seq141 Length=465755 Score = 190 bits (210), Expect = 2e-43 Identities = 489/733 (67%), Gaps = 25/733 (3%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || ||||| || |||||||| ||||| | | ||||| || || || | || Sbjct 372181 TCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG-GCGCA 372239 Query 92987 GGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 || ||||| ||||||||||| || | ||| ||| || || || | | ||| || Sbjct 372240 GGGGAGAGCCTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACG 372299 Query 93044 -ATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || || || || ||| |||| ||| | | | || || | ||| |||||| Sbjct 372300 GATCAC-CTCCTTGCTGGCACGGTTCTTG----AGGTGAGAGTGCAGCAGGCAGGCAAAG 372354 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||||| || | ||| ||||| || || || | ||| ||| || || | ||| || | Sbjct 372355 TCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATG 372414 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || ||||| ||||||||||| || || || |||||| ||| || || ||||| || Sbjct 372415 AGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCG 372474 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CT-GATCCAT 93277 ||||| ||||| || || | || | |||||| | || || || || |||||| Sbjct 372475 ACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA---GGAAGAGTTCTTGTCCTGGATCCAC 372531 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || | ||||| ||||| || || || ||||| | || || || ||||| || ||| Sbjct 372532 TTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGG 372591 Query 93338 TAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || |||| | | |||| | ||||| || ||||| | ||| || || | || | Sbjct 372592 TAGCTGCGCTGG--CTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGG 372649 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| |||||||| || ||||| |||||||| |||| ||| || | |||||| | Sbjct 372650 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGA 372709 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || || | ||| || || || || ||||| || || || || || ||||| | Sbjct 372710 CCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCAAAGA 372769 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGG 93572 | |||| || || || || | ||||| ||||| || | | || | ||| ||| Sbjct 372770 AGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGT 372829 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 ||||| || || ||||| | |||||| | ||||| || || || || || || |||| Sbjct 372830 GCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGT 372889 Query 93633 ACATATCCCATAT 93645 |||| | ||| || Sbjct 372890 ACATTTGCCAGAT 372902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859428730280