Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq143 107 4e-18 seq7 102 2e-16 >seq143 Length=92306 Score = 107 bits (118), Expect = 4e-18 Identities = 433/674 (64%), Gaps = 21/674 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| | | Sbjct 62628 GTCGGATCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 62569 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| ||| | || || || || |||||| |||| |||||| | || Sbjct 62568 GGTGCCGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTTACCAACATTGCT 62509 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCC-----TCATTGTCTCTC 279870 ||||| | | |||||| | |||| | | | || | | ||||| |||| Sbjct 62508 TGGCTGGAGAACTACCT--CAAGTC---ACACCCCGACATCACCAGTTTGATTGTGTCTC 62454 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||||||||| | || ||| | | | ||| |||||||||| || || Sbjct 62453 ACGACTCTGGCTTTTTGGACAACGTCACCACCGACATTTACCACTATGAGCCTAACAAGA 62394 Query 279931 AGCTCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCC 279989 |||| | | || ||| |||||||| | || ||||| ||||| ||||| Sbjct 62393 AGCT-TGCGTGCTACAAGGGCAACCTTGCGGCATTCGTCCAGCTTCGCCCCGAGGCCAAG 62335 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| || || ||| || | ||| | |||||| || || |||| Sbjct 62334 AGCTACTACACTTTGTCGGCGTCCAACGTCCAGTTCAAGTTCCCTCCTCCTGGTATTCTC 62275 Query 280050 GAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || |||| || || || || ||||| | | |||||| | | || Sbjct 62274 ACTGGTATCAAGTCCCAGACCCGTGCCATCATTCGCATGAGCAACGTCTCTTACACCTAC 62215 Query 280110 CCCAATGGCCCCAA--CATC---TTCAGCAGTGTC-AACTCGCAGGTTTCTATGAACTCA 280163 ||||| | |||| |||| ||||| || || ||| | | || || || Sbjct 62214 CCCAAGGCTACCAAGCCATCGCTTTCAGACGTCTCTTGCTCTC---TCTCGCTGTCTTCG 62158 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || | | | | || ||||| || ||||| || ||||||||| | ||||| | || || Sbjct 62157 CGTGTCGCTATTATCGGACCTAACGGTGCTGGCAAGTCTACCTTGATCAAGCTGCTCACC 62098 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 || |||||| |||||| || ||| |||||| |||||| |||| || | ||| Sbjct 62097 GGTGAGACCATTCCCACTGTTGGCAAGGTTGAGAAGCACCCCAACCTGCGTATCGGCTAC 62038 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || ||||| || | | ||| | |||| ||| |||| | |||||| ||||| || Sbjct 62037 ATCAAGCAGCATGCCCTGGAGCACGTGGAGATGCACTTGGAGAAGACTCCCAACCAGTAT 61978 Query 280344 ATTCAGTGGCGCTA 280357 | |||||||| || Sbjct 61977 CTGCAGTGGCGATA 61964 >seq7 Length=2436850 Score = 102 bits (112), Expect = 2e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| |||||||| ||||| |||||| ||||| |||| | | || Sbjct 1625311 CTCACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 1625370 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 1625371 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 1625429 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 1625430 GACTCTCTGGGTGCTCTG 1625447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834205675677