Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq141 444 1e-119 seq7 374 2e-98 >seq141 Length=465755 Score = 444 bits (492), Expect = 1e-119 Identities = 623/861 (72%), Gaps = 30/861 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||||||||| |||||||| ||| Sbjct 372902 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 372843 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 372842 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 372784 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| ||||||||||||||||| ||||| |||||||||| | | Sbjct 372783 TCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCG 372724 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 372723 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 372664 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| Sbjct 372663 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACATCAAGGAGAA 372607 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| ||||| ||||| || || |||||| |||||||| Sbjct 372606 CAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGAAGGC 372547 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| |||| |||||| || | | | || | | || | | || | ||||| | Sbjct 372546 CGACTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTG 372488 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||||||||| ||||||||| || || || ||||||||||||||||||| Sbjct 372487 CCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGGCTCA 372428 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || ||||| || || ||||| || ||||| |||||| | |||||| Sbjct 372427 AGAAGCGAGGTCTC-ATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 372369 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || || || | |||||||||||||| ||| ||| ||||||| | || || Sbjct 372368 GGTCTCCACACCGACTTTGCCTGCCTGCTGCACTC---TCACCTCAAGAACCGTGCCAGC 372312 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 |||||| | |||| | ||||||||| || || || || ||| |||| ||| | || Sbjct 372311 AAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAATTCTTGACC 372252 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| ||||| ||||||||||| | |||| ||| |||||||| || Sbjct 372251 GAGGCTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAG 372192 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACG 43064 | || ||||||| ||| || || | | |||| || || ||||||| | Sbjct 372191 TTTGTTGCCGACCGTCTGCT-TG-----TCGCTCTCGGCAACGAGAAGATCTACAAGTCT 372138 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||| ||||| ||||||||||| || | | ||||||||||||||||||||| Sbjct 372137 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAG 372078 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 ||||||||||||||||||||| Sbjct 372077 AAGCGCGTCGCCGACTACCAG 372057 >seq7 Length=2436850 Score = 374 bits (414), Expect = 2e-98 Identities = 1119/1711 (65%), Gaps = 53/1711 (3%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||| || | || || | ||||||| || | |||||||||||||||||||||| Sbjct 488118 ACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTG 488059 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | || ||||||| || | ||| ||| | |||| Sbjct 488058 AGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGG 488006 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||| ||||||||| ||| || | ||| | | || || Sbjct 488005 --GTCCTT---CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCA 487951 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || | | |||||| ||||| | | |||||||| | || |||| Sbjct 487950 GCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTG 487891 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 | | ||||||| ||||||||| | ||||| || | | |||| || | Sbjct 487890 ATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCATTCTCAGCAATGATACGGTTC 487831 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTT 244092 |||| |||| ||| ||||| | |||| ||| || ||||| | || Sbjct 487830 TTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TT 487775 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || || || |||||||||| |||| || ||||| Sbjct 487774 GACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTC 487715 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || ||| |||||||||| ||||| | ||| || ||||| ||||| || | | || Sbjct 487714 GAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAG 487655 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACAT 244272 || ||||| | | |||||| || ||| | ||||| || ||| ||||||| Sbjct 487654 CAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAG 487595 Query 244273 GCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC-TGA 244331 | | ||||| | |||| |||||||||| || || || | |||| | || Sbjct 487594 GTC--AGAGGGC-------TTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGC 487544 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCG 244390 || | | |||| | | | ||||||||| || || ||| | || | || | Sbjct 487543 AGGTGAT-CCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCC- 487486 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 || ||||| || | |||||||||||| |||||| |||||||| | || |||| | Sbjct 487485 TCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGA 487426 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||||| |||| || | ||| ||||||| || ||||| || || | || Sbjct 487425 GACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCA 487366 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||||| ||| ||| ||||| | ||| || | || ||||| |||| | || Sbjct 487365 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCA 487306 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | |||||| ||||||||| | || | ||| || ||| || ||||||| Sbjct 487305 ATGATCTTGTTAAGGTTGCGGACAACCACCTTGGTGACTTCATGGAGCTTCTTAAAGTCG 487246 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || | | ||| | | || || || || | | |||||| | |||| Sbjct 487245 TA-------GCAGCCTTCG---TTGTAGTCGACATAAGCAGG--GAGGGCCAAAGAGGCC 487198 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||| || || ||||| || | | ||||| || |||||||||||||||||| Sbjct 487197 AAGTTGCAAACAGCAACCTCATCTGGGGCACAGTACTCGATAATCTCGGTGCAGAGGTTG 487138 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || |||||| ||||||| || || ||| |||| ||||||||| ||||||||| Sbjct 487137 GAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAG 487078 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 ||||||||||| || || ||| |||||| | |||| | | ||| || | | | Sbjct 487077 AGCATGAAGGGGTTACCAGTTTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGA 487018 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 || || ||| ||||| | ||||| |||||| ||||| |||||||| Sbjct 487017 GCACGGATGGTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAAT 486958 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACT 244988 || ||| || || | ||||| ||||| || | ||||||||||| |||| | Sbjct 486957 TCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTG--GGGCACATGAGCGTCCAGT 486900 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 | | | || || | || ||||||||| ||||| |||||||| || |||| | || Sbjct 486899 CCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGT 486840 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | | | | ||| ||| ||| |||||| | || || | || |||||||||| Sbjct 486839 CGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGT 486780 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 || ||||||||||||| | ||||| || | ||| || || |||||||| || ||||||| Sbjct 486779 CGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGT 486720 Query 245169 CCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | | ||| ||| | || | |||||||| || || | || | || ||||| ||| Sbjct 486719 CGA-CAT-ATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGT 486662 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAG 245286 ||||||||||| ||||| | ||| || | | || | | || | || ||| | Sbjct 486661 ACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGAT 486602 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || || || |||||| || | ||| || |||| | ||||| || ||||| || Sbjct 486601 ACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCAAT 486542 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 ||| || |||||||| || || ||||| ||||||||||||| || ||| | | | Sbjct 486541 GCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCAGC 486482 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 |||||||| |||||| ||| ||||| ||| Sbjct 486481 ATTGAACAGGGTGGGGGAGGCATGGGTGAAG 486451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336874564720