Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq92 105 6e-18 seq77 105 6e-18 seq67 105 6e-18 seq62 105 6e-18 seq3 105 6e-18 >seq92 Length=352844 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| |||||||| || ||||| | ||||| ||||||||| || | | Sbjct 267906 AACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGG 267847 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || ||||| | |||| || || || | | | ||| | | || ||||| Sbjct 267846 ATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGCCAGCTGGTCG 267787 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||| ||| | ||| || || | |||||||||||| | || |||||||||| |||| Sbjct 267786 ACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCAC 267727 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 || || ||||| || || |||| || || || | ||| | ||||||| | | | Sbjct 267726 TGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCG 267667 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 |||||||| | ||||||||| |||||| |||||||| || Sbjct 267666 AGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCC 267626 >seq77 Length=352580 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| |||||||| || ||||| | ||||| ||||||||| || | | Sbjct 86562 AACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGG 86621 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || ||||| | |||| || || || | | | ||| | | || ||||| Sbjct 86622 ATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGCCAGCTGGTCG 86681 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||| ||| | ||| || || | |||||||||||| | || |||||||||| |||| Sbjct 86682 ACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCAC 86741 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 || || ||||| || || |||| || || || | ||| | ||||||| | | | Sbjct 86742 TGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCG 86801 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 |||||||| | ||||||||| |||||| |||||||| || Sbjct 86802 AGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCC 86842 >seq67 Length=351041 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| |||||||| || ||||| | ||||| ||||||||| || | | Sbjct 84939 AACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGG 84998 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || ||||| | |||| || || || | | | ||| | | || ||||| Sbjct 84999 ATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGCCAGCTGGTCG 85058 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||| ||| | ||| || || | |||||||||||| | || |||||||||| |||| Sbjct 85059 ACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCAC 85118 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 || || ||||| || || |||| || || || | ||| | ||||||| | | | Sbjct 85119 TGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCG 85178 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 |||||||| | ||||||||| |||||| |||||||| || Sbjct 85179 AGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCC 85219 >seq62 Length=351717 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| |||||||| || ||||| | ||||| ||||||||| || | | Sbjct 84939 AACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGG 84998 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || ||||| | |||| || || || | | | ||| | | || ||||| Sbjct 84999 ATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGCCAGCTGGTCG 85058 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||| ||| | ||| || || | |||||||||||| | || |||||||||| |||| Sbjct 85059 ACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCAC 85118 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 || || ||||| || || |||| || || || | ||| | ||||||| | | | Sbjct 85119 TGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCG 85178 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 |||||||| | ||||||||| |||||| |||||||| || Sbjct 85179 AGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCC 85219 >seq3 Length=1872122 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| |||||||| || ||||| | ||||| ||||||||| || | | Sbjct 1606104 AACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGG 1606163 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || ||||| | |||| || || || | | | ||| | | || ||||| Sbjct 1606164 ATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGCCAGCTGGTCG 1606223 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | |||| ||| | ||| || || | |||||||||||| | || |||||||||| |||| Sbjct 1606224 ACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCCAC 1606283 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 || || ||||| || || |||| || || || | ||| | ||||||| | | | Sbjct 1606284 TGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCG 1606343 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 |||||||| | ||||||||| |||||| |||||||| || Sbjct 1606344 AGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCC 1606384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371713119480