Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq141 174 2e-38 seq131 125 7e-24 seq128 93.3 4e-14 >seq141 Length=465755 Score = 174 bits (192), Expect = 2e-38 Identities = 506/766 (66%), Gaps = 31/766 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| |||||| | || || Sbjct 372809 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGACGGC 372750 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGA-ACTCGAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | |||||| | Sbjct 372749 ATTGTCAACGAGAACCTGGTCGAGCGC-TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCG 372691 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 372690 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 372631 Query 52265 CATTGAGCAGCT-GATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322 ||| || || || || || || || || | ||||| | || | || || | ||| Sbjct 372630 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 372573 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | | || ||| | ||||| ||||| | ||||| || ||||||||| || | | | | Sbjct 372572 ACCATTCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 372513 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | | | ||| ||||| |||| ||||| ||| |||||||| | || || ||| Sbjct 372512 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGT 372453 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 |||||| ||||||| | | || | | ||| | ||||| || ||||| || | Sbjct 372452 GCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 372393 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT------- 52554 |||||| | || || || ||||| || || ||||| |||||||| ||||| || Sbjct 372392 AACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTGCACTCT 372333 Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612 || ||||| |||| | | || ||| ||||| ||| ||| ||| Sbjct 372332 CACCTCAAGA--ACCGTGCCAGCAA----------GGAGGTGATCCGTGA-CATCATCAC 372286 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || || || |||| || || || | || || || || ||||| || Sbjct 372285 TGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTCGG 372226 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | | ||| |||||||||||||||| || || |||||| | || Sbjct 372225 CATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTGCTTGTCGC 372166 Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 ||| |||| | | ||| || ||| || ||| || ||||| || ||| | ||||||| Sbjct 372165 TCTC-GGCAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTT 372107 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||| |||||||||||||||||||||||||| |||| ||| || Sbjct 372106 CTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 372061 >seq131 Length=1298602 Score = 125 bits (138), Expect = 7e-24 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGA-CTCCTTTTGAATGTTGTAGTCGC 138445 ||| || || | ||||| ||| || || | || || |||||| || ||||||||||||| Sbjct 570454 GCCACCACGAAGACGCAGAACCAAGTGCA-GTGTGCTCTCCTTCTGGATGTTGTAGTCGC 570512 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| || || ||| || || || ||||| | | |||| | ||||| ||||| |||| Sbjct 570513 TCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAG 570572 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563 | || ||||| ||||| ||| | || | || | ||| || | |||||||| || || Sbjct 570573 GAATGCCTTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTC 570630 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || | || || ||||||||||| || || ||||||||||| Sbjct 570631 CACCTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||||||| || || |||||| || || || || | | | Sbjct 570718 CTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 570777 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| |||||||| || ||||| || ||||| || ||||| ||| | |||| || || Sbjct 570778 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTC-CTGAATCTTTGACTTGACAT 570836 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | || || ||||| | || | || || || |||| || || Sbjct 570837 TG-TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 570895 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 570896 ACGAAGATCTGCAT 570909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 571230 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 571289 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 571290 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTCACA 571349 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||||| ||||||| || | || || || || || || || Sbjct 571350 TTG-TCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 571408 Query 138600 TACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 571409 GACGAAGATTTGCATGG 571425 >seq128 Length=1745744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 1611317 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1611376 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | |||| | ||||| |||||||| || Sbjct 1611377 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1611436 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 1611437 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 1611495 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || || || || || || ||||||||||| Sbjct 1611496 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1611543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261177953840