Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq141 163 3e-35 seq131 131 2e-25 seq128 127 2e-24 seq7 122 8e-23 seq15 95.1 1e-14 >seq141 Length=465755 Score = 163 bits (180), Expect = 3e-35 Identities = 481/727 (66%), Gaps = 21/727 (3%) Strand=Plus/Minus Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920 ||||||||||||||||| | ||| |||| |||||| ||| | |||||| | | |||| Sbjct 372775 TGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGC 372717 Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979 | | || || | ||||| | | ||| ||| || | | || || | Sbjct 372716 GGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 372657 Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038 |||||| | || | ||| ||| ||||| || || |||||| || ||| || ||| Sbjct 372656 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGA-GAACAGCCAGCG 372598 Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 ||| || || || |||| | |||| ||| || ||| | |||| |||||||| |||| Sbjct 372597 CAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGAAGGCCGACTGGG 372539 Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157 |||| |||| || | || | ||| | | ||| | || || | || || ||| Sbjct 372538 CCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCG 372479 Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217 ||||||||| |||||||| || ||||| | || || | | || | || Sbjct 372478 CCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAG 372419 Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277 | | ||||| || || || ||| ||||||||| ||||| | ||||| || || |||| Sbjct 372418 GTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTCCACA 372359 Query 47278 CCAACTTTGCCTGTCT-CT--ACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGC 47331 || |||||||||| || || ||| || | | ||| || | | ||| || ||| Sbjct 372358 CCGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCCAGCAAG---GAGGTGA 372302 Query 47332 CCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGG 47391 | ||| ||||| | | || || ||| |||||| ||| || || |||||| Sbjct 372301 TC--CGT----GACATCATCACTGATGCTGTCCGAATTGAGCAGGAATTCTTGACCGAGG 372248 Query 47392 CTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451 |||| ||| | | | || |||||| | | |||||| |||||||||| |||| Sbjct 372247 CTCTCCCCTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATCGAGTTTG 372188 Query 47452 TCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCAT 47511 | |||||||| ||||| || || | ||||| ||| | | | || || | Sbjct 372187 TTGCCGACCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCCAACCCCT 372128 Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 | || || ||| | |||||||| || | ||||||||||||||||||||||||||||||| Sbjct 372127 TTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 372068 Query 47572 GCGAATA 47578 ||| || Sbjct 372067 CCGACTA 372061 >seq131 Length=1298602 Score = 131 bits (144), Expect = 2e-25 Identities = 174/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| ||||| || | |||| ||||| || | || ||| || || || || Sbjct 570446 CTTTACTGG-CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTT 570504 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| |||| || |||||| || || ||||| || ||||| ||||||| |||||||| Sbjct 570505 GTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTG 570564 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 || ||||| ||||| ||||||||| || || ||||| ||||| ||| |||||| | Sbjct 570565 GTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGT-CGATGGTGTCGG 570623 Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || |||| ||| | || ||||| |||||||| || || ||||||||||| Sbjct 570624 AAGATTCCACCTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || ||| || || || || ||| Sbjct 571227 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 571286 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 571287 GCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTC 571346 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | |||||| |||| ||| | || |||||||| || || Sbjct 571347 ACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 571406 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || || ||||||| Sbjct 571407 TTGACGAAGATTTGCATGG 571425 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| |||| || |||||| || || ||||| || ||||| | Sbjct 570718 CTCCTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 570777 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040 ||| | ||||||||||| || || || |||||||||||| ||| | | || ||||| | Sbjct 570778 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGACTTGACAT 570836 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | || || || | || | || |||||||||| || || | Sbjct 570837 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 570896 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 570897 CGAAGATCTGCAT 570909 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 570941 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCA 571000 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||||||| || ||||| || |||||||||||| ||| || |||| Sbjct 571001 GCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 571060 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | ||| || |||| ||| | || || || || || || Sbjct 571061 ACGTTG-TCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 571119 Query 127096 TTTTAC 127101 || || Sbjct 571120 CTTGAC 571125 >seq128 Length=1745744 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 1611314 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1611373 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 1611374 GAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 1611433 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 1611434 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 1611493 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 1611494 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1611543 >seq7 Length=2436850 Score = 122 bits (134), Expect = 8e-23 Identities = 638/994 (64%), Gaps = 41/994 (4%) Strand=Plus/Minus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || || Sbjct 487804 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 487745 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | | | || | |||| ||| | |||||||| |||||||||| || || ||||| | Sbjct 487744 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGA 487685 Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215 ||| | || || ||||| || | ||||| ||| | | ||||| || ||| | Sbjct 487684 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG-A 487626 Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275 ||| ||| || | ||| | ||||| | || | ||| | || || | ||| Sbjct 487625 TCTGCTCCTTGAGCGAGTCCCACTCCCACA---GGTCAGAGGGCTTGACATCCCACATGT 487569 Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332 || | || | || || |||| |||| | || || | | ||||| || ||||| | Sbjct 487568 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAATGATTCGTAGGGACCCT 487512 Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 | | |||||| | || ||| || || |||| | ||| |||||||| |||| Sbjct 487511 CCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCT 487452 Query 146393 TGTAGTTGACGCT-CCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA---AAG 146448 | ||| | ||| | ||||| || |||| || | | || || || Sbjct 487451 GCTTGTTCA-GCTGACGAGCCTCGGGAGACTCAAAGGGCAT---GCGCAGGGCAAGGAAA 487396 Query 146449 GCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGC 146507 |||||||| |||||||| | || ||||||| ||| ||||| | |||| ||||| || Sbjct 487395 GCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGG 487336 Query 146508 AGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAAT 146567 | || | | ||| ||||||||| || ||||||||||| || || || || || | Sbjct 487335 GCCTCCTGGACAGGG-TAGTGGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACCAC 487277 Query 146568 TTTCGTCAAACGATTCAGCAGGACATAGTC--AAATGTTTTAGTTTTAACGTTGACGCAC 146625 || || | || ||| | |||| | | || ||| || || ||| | Sbjct 487276 CTTGGTGACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCGTTGTA--GTCGACATAA 487219 Query 146626 TTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGC 146685 || ||| | |||||||||||| || || ||| ||| || | | || |||| Sbjct 487218 GCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGGGCACAGTACTCG 487159 Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 | |||||||| |||||||||| || |||| | |||| || || ||||| || | Sbjct 487158 ATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---C 487102 Query 146746 TT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCG 146802 || |||||||| ||||||||||||||| | || || |||||| | || || Sbjct 487101 TTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTTTCGGTCTGGGCTTCC 487042 Query 146803 ACGAT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTT 146859 | ||| |||| | || | | |||| | | ||||| || || || | ||| Sbjct 487041 AGGATGGAAT---ACCACAGCTTCTGAGCACGGATGGTCTTGCGACCACGTCCCTCCTTC 486985 Query 146860 TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917 ||||| ||||| |||| || || || | || || ||| ||||| || Sbjct 486984 TCGTACTTCTCATACAGAGCCTCGAATTCCTCG--CCATAGCAGTCAGCAAGGCCAGGGC 486927 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977 | | ||||| || | |||| ||| || |||| || || || | ||| || | || Sbjct 486926 ATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGAT 486867 Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011 |||||||||| || | || | |||||||||||| Sbjct 486866 CGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC 486833 >seq15 Length=381730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| ||||| Sbjct 261633 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 261692 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 261693 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 261752 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 261753 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 261812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499629079280