Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq128 109 5e-19 seq131 105 6e-18 seq92 93.3 4e-14 seq77 93.3 4e-14 seq67 93.3 4e-14 seq62 93.3 4e-14 seq3 93.3 4e-14 >seq128 Length=1745744 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || || || || || || ||||| ||||| || || ||| | Sbjct 1611317 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1611376 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| |||| || || || ||| | |||||||| ||||||||||| ||| Sbjct 1611377 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 1611436 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || || || || |||| || | ||||||||||||||| || Sbjct 1611437 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1611496 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || || || || || || ||||| |||||| Sbjct 1611497 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 1611544 >seq131 Length=1298602 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| ||||| || || ||||| | ||| | || |||| || || || || | Sbjct 570491 TCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAG 570550 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || |||||||| || ||||||||||| || || ||||| || |||| || | Sbjct 570551 ATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGA-CGTT 570609 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | |||||||||||| || || ||||| || | || ||||| || ||||| || || Sbjct 570610 GTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCAGTCAGAGTCTTGAC 570669 Query 45329 AAAAATTTGCAT 45340 ||||| ||||| Sbjct 570670 GAAAATCTGCAT 570681 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || || || || || ||||| ||||| || || ||| ||| | || | ||| | Sbjct 571215 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG--GACAGAGTTCGGCCATCCT 571272 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| || || ||| | |||| || |||||||| || |||||||| || || || | Sbjct 571273 CGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCT 571332 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || || || | || | ||| |||||||||||||| ||||| || | || | Sbjct 571333 GGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCT 571392 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || || || || |||||||| Sbjct 571393 TGCCGGTGAGGGTCTTGACGAAGATTTGCAT 571423 >seq92 Length=352844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 45152 CTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATAT 45211 ||| ||||| || | ||||| | ||| | | || |||| || || || || | || Sbjct 5777 CTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAAGAT 5718 Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-T 45270 ||| ||||||||||| || ||||||| ||||| || ||||| || |||| || | | Sbjct 5717 CAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGA-CGTTGT 5659 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||||||||| || || | ||| || | || |||| ||| ||||| || || | Sbjct 5658 CGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGACGA 5599 Query 45331 AAATTTGCAT 45340 |||| || || Sbjct 5598 AAATCTGTAT 5589 >seq77 Length=352580 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 45152 CTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATAT 45211 ||| ||||| || | ||||| | ||| | | || |||| || || || || | || Sbjct 348691 CTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAAGAT 348750 Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-T 45270 ||| ||||||||||| || ||||||| ||||| || ||||| || |||| || | | Sbjct 348751 CAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGA-CGTTGT 348809 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||||||||| || || | ||| || | || |||| ||| ||||| || || | Sbjct 348810 CGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGACGA 348869 Query 45331 AAATTTGCAT 45340 |||| || || Sbjct 348870 AAATCTGTAT 348879 >seq67 Length=351041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 45152 CTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATAT 45211 ||| ||||| || | ||||| | ||| | | || |||| || || || || | || Sbjct 347068 CTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAAGAT 347127 Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-T 45270 ||| ||||||||||| || ||||||| ||||| || ||||| || |||| || | | Sbjct 347128 CAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGA-CGTTGT 347186 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||||||||| || || | ||| || | || |||| ||| ||||| || || | Sbjct 347187 CGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGACGA 347246 Query 45331 AAATTTGCAT 45340 |||| || || Sbjct 347247 AAATCTGTAT 347256 >seq62 Length=351717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 45152 CTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATAT 45211 ||| ||||| || | ||||| | ||| | | || |||| || || || || | || Sbjct 347068 CTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAAGAT 347127 Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-T 45270 ||| ||||||||||| || ||||||| ||||| || ||||| || |||| || | | Sbjct 347128 CAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGA-CGTTGT 347186 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||||||||| || || | ||| || | || |||| ||| ||||| || || | Sbjct 347187 CGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGACGA 347246 Query 45331 AAATTTGCAT 45340 |||| || || Sbjct 347247 AAATCTGTAT 347256 >seq3 Length=1872122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 45152 CTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATAT 45211 ||| ||||| || | ||||| | ||| | | || |||| || || || || | || Sbjct 1868233 CTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAAGAT 1868292 Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-T 45270 ||| ||||||||||| || ||||||| ||||| || ||||| || |||| || | | Sbjct 1868293 CAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGA-CGTTGT 1868351 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||||||||| || || | ||| || | || |||| ||| ||||| || || | Sbjct 1868352 CGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGACGA 1868411 Query 45331 AAATTTGCAT 45340 |||| || || Sbjct 1868412 AAATCTGTAT 1868421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002086942120