Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 219 5e-52 seq141 141 1e-28 >seq7 Length=2436850 Score = 219 bits (242), Expect = 5e-52 Identities = 1174/1848 (64%), Gaps = 61/1848 (3%) Strand=Plus/Minus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | |||| ||||| || ||| ||||| | || ||||||||||| || ||| Sbjct 488121 TCAACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTC 488062 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 ||||| || |||||||| || | ||||| || | |||| | ||| || Sbjct 488061 TTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGGTCC 488002 Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698 | |||| || ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 488001 TTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATC 487942 Query 115699 TCAATCACATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATC 115754 | | || || || ||| | ||||| || || |||| ||| ||| ||||| Sbjct 487941 TGGA-CA-AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATC 487886 Query 115755 ATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTT 115811 || ||||| | ||| || || || |||||| || | |||| | | ||| Sbjct 487885 TTCGGGGATGTTGGGGATGTTCTGAATGGAGCCATT---CTCAGCAATGATACGGTTCTT 487829 Query 115812 CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGA 115867 ||| | | |||||||| || | | || |||| | | ||| | |||| Sbjct 487828 CATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGA 487773 Query 115868 CAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAA 115927 |||| ||||| || || ||| |||| | | |||||||||| ||||| ||||| | Sbjct 487772 CAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGA 487713 Query 115928 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 115987 ||||||| ||||| |||| || |||| || ||| || ||||| || || | ||| | Sbjct 487712 AGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCA 487653 Query 115988 GGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTT 116045 ||||||||| ||| | || | || | |||||||| | |||||| || | | | Sbjct 487652 AGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 487593 Query 116046 GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCC 116105 || | || | |||||||| || || |||||||| || | ||| || || ||||| Sbjct 487592 CAGAG--GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCC 487535 Query 116106 CTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGC 116165 || |||| || || || ||||| |||| || | || ||||| ||||| || Sbjct 487534 CTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGC 487475 Query 116166 GTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACG 116224 || || || |||||||| || | |||| || | | ||||| || ||||| | Sbjct 487474 ATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGG 487416 Query 116225 CGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGAT 116284 | || || || | || || ||||| |||||||| | ||||| || || | Sbjct 487415 GCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGT 487356 Query 116285 GTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTAT 116344 | | ||| || || || || || || || || || ||| || | | | | Sbjct 487355 GGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGT 487296 Query 116345 TTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAG 116404 | || || | || ||||| |||| |||||| ||||| | | || | | || Sbjct 487295 TAAGGTTGCGGACAACCACCTTGGTGACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTT 487236 Query 116405 TCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCAT 116464 | | | |||||| ||| ||||| | || |||| || || |||| ||||| Sbjct 487235 CGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCAT 487176 Query 116465 CCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGT 116524 | || |||||| ||||| || || || | || || || ||||| |||| || Sbjct 487175 CTGGGGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGT 487116 Query 116525 TCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCT 116584 |||| || || ||| ||| || ||||||||||||||||| | || | || || | Sbjct 487115 TCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTTT 487056 Query 116585 CCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTGG- 116641 | || |||| | || || | | ||| | || ||| |||| | ||| ||| Sbjct 487055 CGGTCTGGGCTTCCAGGATGGAATACCACA-----GCTTCTGAGCACGGATGGTCTTGCG 487001 Query 116642 --CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-T 116698 | || ||||||| ||||||||| || || ||||| || || || || | ||| | Sbjct 487000 ACCACGTCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCCTCGCC-ATAGCAGT 486942 Query 116699 CTGAGAGCCCTGGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTC--CTCAA 116755 | | || || || || || ||| || | ||| | ||| | ||| || ||||| Sbjct 486941 CAGCAAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAA 486885 Query 116756 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 116815 | |||||||||||||| || || |||||||| || ||| | || ||| ||| | | Sbjct 486884 CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCT 486825 Query 116816 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 116875 |||| | || || || || | || | || || | || || |||||||| || | Sbjct 486824 CTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCT 486765 Query 116876 CCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCG 116929 | ||||| | || | | || | |||| |||| |||||| ||||| || | Sbjct 486764 CGAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTACCACCCTGGTCGACATATCTGG 486708 Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989 | || ||| || || |||||||| ||||| ||||| | || || || || || Sbjct 486707 CAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAG 486648 Query 116990 GAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 ||| ||| | |||| | || ||||| || || || ||||| || ||| || Sbjct 486647 CAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCT 486588 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | || || || || | | ||| || | ||||| || || || || |||| Sbjct 486587 TGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCA 486528 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTT 117168 | ||| | |||||| |||| || ||||| || |||||||| ||||| ||||| Sbjct 486527 TGTCGACCAAGAAGCATGAGGACAGCTG-GGCCTGCGGGGTACCAGCATTGAACAGGGTG 486469 Query 117169 GGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGG 117226 || | || ||| ||| | | |||| ||||| | ||| ||||||| |||| Sbjct 486468 GGGGAGGCATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCT 486411 Query 117227 GAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 |||||| || || || || | || || ||||||| ||||| || || || | Sbjct 486410 CAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGTGGCCGCTCAA 486351 Query 117287 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | | ||||| ||| || ||||||| |||||| ||||||| Sbjct 486350 CAATCTTGCCATCAAGCTTCAGGAGGTATGATCGCTCCAAAGTCTTGA 486303 >seq141 Length=465755 Score = 141 bits (156), Expect = 1e-28 Identities = 348/521 (67%), Gaps = 9/521 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||||||||| |||||||| || || || ||| |||||| Sbjct 372349 GCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 372408 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| | || ||||||||| Sbjct 372409 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 372468 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || || |||| || |||| ||||||||| | ||| | | | Sbjct 372469 CCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATC 372528 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||||| || ||||| | ||||| || ||| || || | ||||| || || | ||| Sbjct 372529 CACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAAG 372588 Query 127760 A-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || || | | ||| | || |||||||| | || ||||| || || || | Sbjct 372589 AGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCT 372646 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | ||||||| | || || ||| ||| Sbjct 372647 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 372705 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| ||||| || || || | ||| Sbjct 372706 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCA 372765 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 372766 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 372825 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| |||||||| || ||||| | ||| || || ||||| Sbjct 372826 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 372866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505689238520