Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq141 233 3e-56 seq7 122 1e-22 >seq141 Length=465755 Score = 233 bits (258), Expect = 3e-56 Identities = 564/843 (67%), Gaps = 27/843 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||| | | || || |||||||| | || ||||| Sbjct 372075 CTTCTCGAAAAAGTTGGTCTTGCCGCCAAGAGAAATGTTCTCCATGAAGTCAAAGGGGTT 372134 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || || ||| |||| |||||||| | |||| | ||| || ||||| | Sbjct 372135 GGCAGACTTG-TAGATCTTCTCGTTGCCGAGAGCGACAAGCAGACGGTCGGCAACAAACT 372193 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 ||||||| || | |||| | | |||| || || ||||| |||||| || || Sbjct 372194 CGATGTA-CTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCGCAGGGGAGAGCCTCG 372252 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTA 159885 | || || |||| |||||| ||| || || || | || | || ||| | | | Sbjct 372253 GTCAAGAATTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACGGATCACCTCCTTG 372312 Query 159886 C---CCCGG--CTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 | | ||| |||| | ||| ||| ||||| ||||||||| ||| Sbjct 372313 CTGGCACGGTTCTTGAGGTGAGAGTG---------CAGCAGGCAGGCAAAGTCGGTGTGG 372363 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || |||||||| |||||||||| ||||||||| | | | || || ||||||| || ||| Sbjct 372364 AGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGC 372423 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 |||||||| || |||| |||||||||||||| || ||||| ||||| ||||| ||| Sbjct 372424 TTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCGACGGCGGCA 372483 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || || || || | || |||| || | ||| |||| ||| ||||| | ||||||| Sbjct 372484 AAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCAG 372543 Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA---ATCTGTCCTGC 160177 || |||||||| |||||| || ||| ||| | |||||| || | | ||| ||| Sbjct 372544 TCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGG 372603 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 ||| |||||||| || | || ||| ||||| | || | ||| | || Sbjct 372604 CTGTTC---TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTC 372660 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 || || ||||| ||| |||||| || ||||| | ||| ||||| || Sbjct 372661 TCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTG 372720 Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 || | | |||| || | || || | ||||| | ||| |||||||| |||| | | Sbjct 372721 AAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCAAAGAAGGCCAGGATG 372780 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTG 160416 ||||||||||| | ||||||| | ||| || | || | ||||| ||| || || | Sbjct 372781 TGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGATCCTT 372839 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 || || ||||| |||||| ||| |||| || |||| || | |||||||| ||| Sbjct 372840 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCA 372899 Query 160477 GAT 160479 ||| Sbjct 372900 GAT 372902 >seq7 Length=2436850 Score = 122 bits (134), Expect = 1e-22 Identities = 348/530 (66%), Gaps = 4/530 (1%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| || || || ||| || | ||||||| | | Sbjct 488080 CAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAAT 488021 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| || ||||||| |||||| |||||||| |||||| || || ||||||| Sbjct 488020 CTTGCCCATTGTGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGC 487961 Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 | ||||| || ||||| | || ||| ||| ||||||||||| || |||||| | Sbjct 487960 ACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTA 487901 Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCA 204122 | | | || | | || || | | | | || ||| || ||||| || || || | Sbjct 487900 AAGGGCCTTGATATCTTCGGGGATGT-TGGGGATGTTCTGAATGGAGCCATTCTCAGCAA 487842 Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182 | | | || || | | || ||| | ||| || ||| ||| | || Sbjct 487841 TGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCC 487782 Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242 |||||||| | ||| || || |||| || || | ||| | | | |||| ||| Sbjct 487781 AGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGT 487722 Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302 | || ||||| |||||||||||| | |||||| | || ||||| || ||||| || | Sbjct 487721 AGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGG 487662 Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAG 204361 | ||||||| | ||||||| ||||| | | || |||| ||| || ||| ||| Sbjct 487661 CGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA-TCTGCTCCTTGAGCGAGTCCCAC 487603 Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || || || ||| || || ||||||||||||| || | |||||| Sbjct 487602 TCCCACAGGTCAGAGGGCTTGACATCCCACATGTCGAATTGGAGGATGCC 487553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153241930320