Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq128 136 9e-27 seq131 132 1e-25 seq15 86.0 1e-11 seq92 84.2 5e-11 seq77 84.2 5e-11 seq67 84.2 5e-11 seq62 84.2 5e-11 seq3 84.2 5e-11 >seq128 Length=1745744 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||||| |||| ||||||||| | | || Sbjct 1611323 CGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 1611382 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||||| | |||||||||||||| ||| || Sbjct 1611383 CGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCC 1611442 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 1611443 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 1611502 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || ||||| || Sbjct 1611503 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 1611540 >seq131 Length=1298602 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| | || ||| Sbjct 571203 CGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 571262 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||| || |||||||||||||| ||| ||| || Sbjct 571263 CGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCC 571322 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| ||| || | | || || || | Sbjct 571323 TCCTTGTCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGG 571382 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 571383 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 571420 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||| || || |||||| |||| ||||||||| ||| || Sbjct 570461 CGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 570520 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || || ||||| | ||||||||||| ||| ||| ||| Sbjct 570521 CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCT 570580 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 570581 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGG 570640 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || ||||| || Sbjct 570641 GTGATTGTCTTGCCAGTCAGAGTCTTGACGAAAATCTG 570678 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || |||||| || | ||||||||| ||| || Sbjct 570689 CGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGGTG 570748 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || ||||| ||||||||||| ||||| ||| || Sbjct 570749 CGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCC 570808 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| || |||| |||||||| || ||| || ||||| Sbjct 570809 TCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAAT 570868 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 570869 GTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTG 570906 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||||||||| || ||||| |||| ||||||||| | | || | ||||| Sbjct 570926 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 570985 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||||||||| ||| || || || ||| Sbjct 570986 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 571045 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | || || || || | ||||| ||| Sbjct 571046 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 571105 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 571106 TTTCCAGTGAGGGTCTTGAC 571125 >seq15 Length=381730 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| || || |||| Sbjct 261631 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 261690 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 261691 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 261750 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 261751 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 261810 Query 199620 AA 199621 || Sbjct 261811 AA 261812 >seq92 Length=352844 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 || ||| |||| |||| |||| ||| || || |||||||||||||| || || || Sbjct 5780 CTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAA 5721 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | || |||||||| || ||| | ||| || |||||||| ||| ||| Sbjct 5720 GATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGACGTT 5661 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| |||||| | | ||| || | | ||||| ||||| | |||||||| || || Sbjct 5660 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGAC 5601 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 5600 GAAAATCTG 5592 >seq77 Length=352580 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 || ||| |||| |||| |||| ||| || || |||||||||||||| || || || Sbjct 348688 CTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAA 348747 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | || |||||||| || ||| | ||| || |||||||| ||| ||| Sbjct 348748 GATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGACGTT 348807 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| |||||| | | ||| || | | ||||| ||||| | |||||||| || || Sbjct 348808 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGAC 348867 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 348868 GAAAATCTG 348876 >seq67 Length=351041 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 || ||| |||| |||| |||| ||| || || |||||||||||||| || || || Sbjct 347065 CTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAA 347124 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | || |||||||| || ||| | ||| || |||||||| ||| ||| Sbjct 347125 GATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGACGTT 347184 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| |||||| | | ||| || | | ||||| ||||| | |||||||| || || Sbjct 347185 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGAC 347244 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 347245 GAAAATCTG 347253 >seq62 Length=351717 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 || ||| |||| |||| |||| ||| || || |||||||||||||| || || || Sbjct 347065 CTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAA 347124 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | || |||||||| || ||| | ||| || |||||||| ||| ||| Sbjct 347125 GATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGACGTT 347184 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| |||||| | | ||| || | | ||||| ||||| | |||||||| || || Sbjct 347185 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGAC 347244 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 347245 GAAAATCTG 347253 >seq3 Length=1872122 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 || ||| |||| |||| |||| ||| || || |||||||||||||| || || || Sbjct 1868230 CTTCTTCTGGATGTTGCAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCAAA 1868289 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | || |||||||| || ||| | ||| || |||||||| ||| ||| Sbjct 1868290 GATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCTTTGTCGTGAATCTTGGACTTGACGTT 1868349 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| |||||| | | ||| || | | ||||| ||||| | |||||||| || || Sbjct 1868350 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCGGGTGAGAGTCTTGAC 1868409 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 1868410 GAAAATCTG 1868418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178918624328199