Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq141 280 1e-70 seq131 118 1e-21 seq128 118 1e-21 seq15 105 7e-18 >seq141 Length=465755 Score = 280 bits (310), Expect = 1e-70 Identities = 571/831 (69%), Gaps = 29/831 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| ||||| || || || || ||||| |||||| | ||| || || |||||||| Sbjct 372076 TTCTCGAAAAAGTTGGTCTTGCCG-CCAAGAGAAATGTTCTCCATGAAGTCAAAGGGGTT 372134 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 ||| | |||||| ||| | |||||| || |||| ||||| | |||||| || || Sbjct 372135 GGCAGACTTGTAGATCTTCTCGTTGCCGAG-AG--CGACAAGCAGACGGTCGGCAACAAA 372191 Query 132741 CTCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGC 132797 ||||||||| ||| ||| |||| | | || | || ||||| |||| || || || Sbjct 372192 CTCGATGTACTGCTTCATCAGGTT--GGAGTTCATGCCGAGCAGGGCGCAGGGG-AGAGC 372248 Query 132798 TTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC 132857 ||||| | || ||||| || ||| || || |||| ||| || | | | | Sbjct 372249 CTCGGTCAAGAATTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACGGATCACCTC 372308 Query 132858 CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917 | ||| | || | | | || | || || ||| ||||||||| || | || Sbjct 372309 CTTGCTGGCACGGTTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCGGTGTGGAGACC 372368 Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 |||||| | || ||||| |||||| || |||| || |||||||| || || || || Sbjct 372369 CTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTT 372428 Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037 |||||| || |||| ||| ||| || ||||||| ||||||||||| || || || Sbjct 372429 GAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGC 372488 Query 133038 CACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 |||||||||| | | || | | ||||| | |||| ||||| | ||||| ||| Sbjct 372489 AACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG--ATCCACTTGATGGCCCAGTCG 372546 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCC 133155 ||||| | || ||| || || || || |||||||| || | | || | | || | Sbjct 372547 GCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAG--GTAGCTGCGCTGGC 372604 Query 133156 GAGGAACGC----ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 | | | | ||||||||||||||| || || | || ||||| | |||||| Sbjct 372605 T--GTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTC 372662 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 ||| ||| || |||||||| ||||| || |||||| | ||| || || ||| Sbjct 372663 CATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAA 372722 Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 ||||||||||| || |||||||| |||||||| |||||| || |||||||| | ||| Sbjct 372723 GCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCAAAGAAGGCCAGGATGTG 372782 Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGA 133388 |||||| | ||||| ||||||| ||| | ||||||| || |||||||| Sbjct 372783 AGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGA 372842 Query 133389 CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| || | ||| ||| ||||||| || || |||||||| || |||||||| Sbjct 372843 CAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 372893 >seq131 Length=1298602 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 571423 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 571364 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 571363 GATACCATCGACAATGTGAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 571304 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 571303 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 571244 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 571243 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 571209 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || |||||| |||| || || | || Sbjct 570681 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 570622 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| || || ||||| | ||||| Sbjct 570621 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCA 570563 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || |||||||| |||| |||||| | | ||||||||| Sbjct 570562 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 570503 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||| || ||||| ||||| |||||| | | || |||| Sbjct 570502 CATCCAGAAGGAGAGC-ACACTGCACTTGGTTCTGCGTCTTCGTGGTGGCC 570453 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| || || ||||||||| |||| || ||| | | || | | | Sbjct 571127 TCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCG 571068 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| || || | ||||| ||||| || Sbjct 571067 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGACTG 571009 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 571008 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 570949 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || | || || ||| Sbjct 570948 GAATCCACTCTCCACCTTGTCCTTCGT 570922 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || ||||| |||||||| | || || || | | Sbjct 570909 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 570850 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || ||| || | ||||| ||||| |||||| | || || Sbjct 570849 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 570790 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || |||| |||||| | | |||||||||| Sbjct 570789 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGCGACTACAAC 570730 Query 38424 ATCCAAAAGGA 38434 || || ||||| Sbjct 570729 ATTCAGAAGGA 570719 >seq128 Length=1745744 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 1611546 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1611487 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| |||||| | ||| Sbjct 1611486 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1611427 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || || |||||||| || | || |||||| ||||||| Sbjct 1611426 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 1611367 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || || |||| ||||| Sbjct 1611366 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 1611329 >seq15 Length=381730 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 261811 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 261752 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 261751 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 261692 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 261691 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 261632 Query 38433 G 38433 | Sbjct 261631 G 261631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171568324480