Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 244 1e-59 seq141 143 3e-29 seq9 100 4e-16 >seq7 Length=2436850 Score = 244 bits (270), Expect = 1e-59 Identities = 928/1434 (65%), Gaps = 33/1434 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| || | | || ||| || || || ||||| ||| Sbjct 486359 CCACAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 486418 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||||||| || ||||| | | |||| ||| || | || ||||| ||| Sbjct 486419 CTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACCCATGCCTCCCCCACCCTGTTC 486478 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || |||||||| || |||| ||||| || ||| | | | | ||||| ||| Sbjct 486479 AATGCTGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGAT 486538 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || || | |||||| | ||||||| || || ||| ||||||| Sbjct 486539 AGCATTGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTGGT 486598 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| || | |||| | ||| ||| || || || Sbjct 486599 GGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAAC 486658 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||||||||| |||||||| || || ||| ||| || | ||||| Sbjct 486659 GGTACCTCCAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATGTC 486718 Query 111972 AACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| | |||| | || | || |||| || ||||| |||||| Sbjct 486719 GACCAGGGTGG---TAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCAC 486775 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGT 112083 || || || | || |||||||| | || ||||| || | || |||| |||| | Sbjct 486776 GCCGACGTCTTTGAATTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCT 486835 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| ||| Sbjct 486836 --CGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGA 486893 Query 112144 --GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 ||| | ||| | ||| | || || || || || || || || | || ||| | Sbjct 486894 ACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTAT- 486949 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GA 112257 || ||||| || || || || || ||||||||| | || | || | | | || || Sbjct 486950 GGCGAGGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGACGTG-GTC-GCAAGA 487007 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | | | ||| | || | ||||| | | || || | | || ||||| ||||||| Sbjct 487008 CCATCCGTGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAAACTGGTAAC 487066 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| || ||||| |||| ||||| || || ||||| |||| Sbjct 487067 CCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 487126 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || ||||||||||| || || || | || | | | ||||||| ||| Sbjct 487127 ATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCCCCAGATGAGGTTGCT 487186 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--AT 112494 || || ||| | || || | || ||||| ||||| || | | | || ||| | | Sbjct 487187 GTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGA-CTACA-ACGAAGGCTGCT 487244 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | | || ||||| ||||| || || || ||||| |||| | | Sbjct 487245 ACGACTTTAAGAAGCTCCATGAAGTCACCAAGGTGGTTGTCCGCAACCTTAACAAGATCA 487304 Query 112555 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 ||||| || ||||| || || || || || || ||| | ||||| || | Sbjct 487305 TTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCCA 487364 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGAT 112673 ||||| | |||||||| ||||| || || | ||| || | || ||| | ||||| Sbjct 487365 TTGGTGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTTGAG 487423 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||| || | | || || || |||||||| || || || || || ||| Sbjct 487424 TCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGCCCTT 487483 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 ||||| | |||| | || |||| || ||||| || ||| | || |||| || || Sbjct 487484 GAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATCACCT 487543 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 112853 || || | || | || ||||| || |||||||| | || || | | || Sbjct 487544 GCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCAAGCCCTCTGACCTGTGGGAG 487603 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 112913 |||||| | |||||||| | ||||||||| | ||| || ||||| | | | || Sbjct 487604 TGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTCCTCGCC 487663 Query 112914 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 112973 || |||||||| ||| || | || || |||| || || || ||||| || |||||| Sbjct 487664 CCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTAC 487723 Query 112974 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 || | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 487724 ACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 487777 >seq141 Length=465755 Score = 143 bits (158), Expect = 3e-29 Identities = 353/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 372866 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 372807 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||| | || || || ||| Sbjct 372806 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATT 372747 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 372746 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 372688 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | || ||||| ||| |||| Sbjct 372687 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 372629 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 102109 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 372628 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 372571 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || || | ||||| || || ||||| || |||||| | | |||| | | Sbjct 372570 CATTCCTTGCATCCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 372511 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||||||| |||| || | || ||||| || ||||||||||||||| ||| Sbjct 372510 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTG 372452 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 | || | | || | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 372451 CTTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 372392 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||||||||| |||||| || ||||| Sbjct 372391 ACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 372349 >seq9 Length=1761156 Score = 100 bits (110), Expect = 4e-16 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 || || || || |||||||||| |||||| ||| ||| | || | | | || | Sbjct 1107170 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGCGAACAAG 1107229 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || | |||||| | ||||||||||||||||||||||| || | | || || Sbjct 1107230 TCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCCGCTCACG 1107289 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || | ||| || || ||| || || ||| | || ||||||||||||||| || || Sbjct 1107290 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 1107348 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 16300 ||||| || ||||| | ||||||||| ||||||||||| || |||| |||| | Sbjct 1107349 TCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT- 1107407 Query 16301 TCTCTCAGGTTGCTTAAGAAA 16321 ||||||| ||||| || || Sbjct 1107408 --TCTCAGGCTGCTTTAGGAA 1107426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740871421840