Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 279 6e-70 seq9 125 8e-24 seq141 91.5 2e-13 seq8 82.4 9e-11 >seq7 Length=2436850 Score = 279 bits (308), Expect = 6e-70 Identities = 1038/1604 (65%), Gaps = 61/1604 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| |||||||||||||||||| | | ||| Sbjct 487990 GTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGG-----ACA 487936 Query 109560 CTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 ||| | ||| ||| |||||||| |||||||| | ||||||||| ||||| ||| Sbjct 487935 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTCGGGGATG 487876 Query 109615 TCCACGATGTTTTGAATAGAGCCA---CCAGCCTTCACCATGAGATCCTTCATCTCTTTC 109671 | |||||| ||||| |||||| |||| | || | | |||||| | | Sbjct 487875 TTGGGGATGTTCTGAATGGAGCCATTCTCAGC---AATGATACGGTTCTTCATGGCATCG 487819 Query 109672 GACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCA 109731 |||||||| ||| | || || | | ||| |||||| || || || Sbjct 487818 GACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCG 487759 Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 || ||||| ||||| |||||||||| | |||||||| ||||| ||||| |||||| Sbjct 487758 CCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTG 487699 Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851 || || || || | || || || ||||| || || | ||| | ||||| || | Sbjct 487698 CCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTA 487639 Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA--- 109908 || | | ||| | | |||| | | |||||| || |||| | | | Sbjct 487638 CCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTC-------CCAC--AGGTCAGAG 487588 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 | || |||||||||| || ||| || | ||||| | ||||| || |||||||| Sbjct 487587 GGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAAT 487528 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||| | ||||| |||| ||| | ||| |||||||| || |||||||| || Sbjct 487527 GATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAG 487468 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 || |||||||| || || |||| | |||| ||| | | || ||||| | | Sbjct 487467 ATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAAGGGCA-TGCG 487409 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || | || || | || || |||||||| ||||| | ||||||||| || || ||| Sbjct 487408 CAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTGGCGCAT 487349 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | || || | || ||||| |||| || |||| | || || || Sbjct 487348 GTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTAAGGTT 487289 Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTTTTCGTCTCC 110265 || ||| |||| ||||||||| || | | ||| | | |||| | Sbjct 487288 GCGGACAACCACCTTGGTGACTTCATGGAGCTTCTTAAAGTCGTAGCAGCCTTCG--TTG 487231 Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 | | |||||| ||||| || | ||| || | ||||| |||| | ||| ||| | Sbjct 487230 TAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGG 487171 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 | ||| || | ||| || || || | |||||| || ||| |||| ||||||| Sbjct 487170 GCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTC 487111 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || || ||| |||||| |||||||| ||||||||| | ||| |||||||||| ||| Sbjct 487110 TGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTTTCGGTC 487051 Query 110446 TGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGA 110502 || | | || |||| | ||| | | || | || ||| | ||||| | | | Sbjct 487050 TGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCACGGATGGTCTTGCG--ACCACGT 486994 Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562 || |||| ||||||||| |||| |||| ||||||| || || |||| ||| Sbjct 486993 CCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCCTCGCCATAGCAGTCAGCAAG- 486935 Query 110563 CCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTCTTC 110619 || || || || ||| || | ||| | ||| |||| || |||||| | |||| Sbjct 486934 GCCAGGGCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTC 486877 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 ||||| || || |||||||| | || ||| | ||| || || ||||||| | Sbjct 486876 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTG 486817 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| ||| || || | || || | || || | |||||| || ||||| ||| Sbjct 486816 CCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAG 486757 Query 110740 ACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793 | || | || || | |||| ||| |||||| ||||| | || ||| Sbjct 486756 ATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCGACATATCTGGCAGTGTTG 486700 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853 |||||||| | ||||| |||||||| || | ||| ||| || || || ||| Sbjct 486699 TTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAA 486640 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 || ||||||| ||| ||||| | || || |||||||| ||| ||| ||| Sbjct 486639 GAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATC 486580 Query 110914 TGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 ||||| ||| | || || |||| ||||| ||||| ||| |||| || | | Sbjct 486579 ATGGCACATGTCT-TCAGAGTGTCATAGATACCCTCAATGCTATCGTCCTTCATGTCGAC 486521 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 | ||||| || |||| ||| | | || || || |||||||| || || || | || Sbjct 486520 CAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGC 486461 Query 111033 ATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 ||| ||| ||| |||| ||||| ||||||||| || || Sbjct 486460 ATGGGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 486419 >seq9 Length=1761156 Score = 125 bits (138), Expect = 8e-24 Identities = 338/506 (67%), Gaps = 22/506 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| || || || || | || || | || || |||||| |||| || || |||| Sbjct 1106986 ATCGAAGCGGCCAGGTCGCATCAGTGCCTTGTCTAGTATATCGGCACGATTGGTGCCGGC 1107045 Query 11565 AATGACTACAATGCCAGT-CTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| || | || || ||| ||| ||| ||||||||||| || |||| |||||| Sbjct 1107046 CAAGACGACGA--CCTGTTCTCTCGTGTTGAATCCGTCCATTTCCGTAAGAATCTGGTTA 1107103 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT------- 11675 | || |||||||| |||||| | | |||| |||| | | | | Sbjct 1107104 AGTGTAGCCTCACGCTCGTCGTTGCCGCCGAATCCACG-GCCGCTCTCCTGTCGAGCACG 1107162 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||||| |||||| || || || ||||| | ||| || ||| || || ||| | Sbjct 1107163 ACCGATAGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGGCCCTCAGC 1107222 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793 ||| | || | |||||| | || ||||| || |||||||| ||||| | | | Sbjct 1107223 GAACAAGTCTCTTACACGAGAAGGACCCACACCAACAAACATCTCCACGAATTCAGATCC 1107282 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || | | ||||| ||| || || |||||| ||||| | || ||||| |||||| Sbjct 1107283 GCTCA-CGCTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTC 1107340 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911 || || || || |||| || ||||||| ||| || || || ||||||||||| |||| Sbjct 1107341 TTTCCTGTTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTC 1107400 Query 11912 -CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 |||| | |||||||| ||| |||||| |||| |||| || || |||||| Sbjct 1107401 TCAAACT---TCTCAGGCTGCTTTAGGAAGCTAACAAACTCCATAATCTCAGTCTTGGCT 1107457 Query 11971 GAGTCGATACCCTCAACATCGGTGAA 11996 || | ||| |||||||| |||| Sbjct 1107458 TCCTCCAGACCAGCAACATCGCTGAA 1107483 >seq141 Length=465755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| || ||| || || Sbjct 372348 GGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 372407 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| |||| || |||||||| Sbjct 372408 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 372467 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| || ||| || || | || |||| || ||||| ||| |||||| || Sbjct 372468 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGC-AAAGGAAGAGTTCTTGTCCTGGA 372526 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 |||||||| ||||||| |||||| Sbjct 372527 TCCACTTGATGGCCCAGTCGGCCTT 372551 >seq8 Length=449263 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/328 (66%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||| | |||||| | || |||||||| | |||| || ||||| ||| | Sbjct 25365 ACCAATAGCGTCGAGTTCGTCGATGAAGATGATAGCAGGGGACTTGGCTTTGGCCGCCGC 25306 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 || || || || |||||||| || || ||||| || || || ||| |||| | | | Sbjct 25305 AAATAGCTCTCGGACACGCTTGGCGCCGACACCAACAAAGATTTCATCGAATTCACTGCC 25246 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | | ||| ||||| | ||| ||||||| ||||||||||| || ||||| Sbjct 25245 AGACATGTAGAAGAATGGAACGCCGGCCTCTCCAGCGACAGCTCGAGCGAGCAGCGTCTT 25186 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 || |||||||| | ||| |||| || | || ||| | ||||||||| || | Sbjct 25185 TCCAGTACCAGGGGGTCCAACGAGGAGAACACCTTTGGGCAGCTTGGCACCCAAGTCAGA 25126 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 ||| || || || || || || || | ||||| || || |||||||| ||| Sbjct 25125 AAAGCTATCCGGGTTACGAAGAAATTCGACCACCTCCTGTAGCTCTTCCTTGGCCTCGTC 25066 Query 11976 GATACCCTCAACATCGGTGAAACGAGTC 12003 | || | ||| ||| ||| || ||| Sbjct 25065 GCATCCGTGAACGTCGTCGAATCGGGTC 25038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974549646600