Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq128 147 5e-30 seq131 145 2e-29 seq92 111 3e-19 seq77 111 3e-19 seq67 111 3e-19 seq62 111 3e-19 seq15 111 3e-19 seq3 111 3e-19 seq7 91.5 3e-13 >seq128 Length=1745744 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || |||| ||||| || Sbjct 1611335 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 1611394 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | ||| || ||||| || |||||||| || ||||| || Sbjct 1611395 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 1611454 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| |||||||| | |||||| Sbjct 1611455 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 1611514 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1611515 CCCGTGAGGGTCTTGACGAAAATCTGCAT 1611543 >seq131 Length=1298602 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 || ||| | ||| || ||| ||| || || || ||||| ||| |||| || | || | Sbjct 570469 CAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCGACCGT 570527 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| ||||||||||| || ||||| | || || ||||| |||||||||||||| |||| Sbjct 570528 CTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCTTCCTTGT 570587 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 | ||||| || ||||||||| || |||||||| ||| |||||| || ||||| | | Sbjct 570588 CCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTG 570647 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || |||| ||| || ||||| | ||||| Sbjct 570648 TCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 570681 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| |||||||| || || || || ||||| |||| || |||| ||||| || Sbjct 570929 ACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCA 570988 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| ||||| || ||||| ||||| || || || ||||| || Sbjct 570989 AGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 571048 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||| || || ||||| || ||||| | |||||| Sbjct 571049 ATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTT 571108 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 571109 CCAGTGAGGGTCTTGACGA 571127 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| ||||||| ||||| ||| Sbjct 571215 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 571274 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 571275 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 571334 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || ||| || || || ||||| | ||||| Sbjct 571335 ATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTG 571394 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 571395 CCGGTGAGGGTCTTGACGAAGATTTGCAT 571423 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTTC 194990 ||||||||||| ||| ||| || ||||| ||||| ||| |||| || | || || || Sbjct 570701 ACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAG-GTGCGACCGTCCTC 570759 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || |||||||| || || || || || ||||| || || ||||| || Sbjct 570760 AAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 570819 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| |||||| || || |||||||| || ||| || || | || | ||||| Sbjct 570820 AATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTT 570879 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 570880 GCCGGTCAACGTCTTGACGAAGATCTGCAT 570909 >seq92 Length=352844 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||| | ||||| ||||| || ||||||| ||| Sbjct 5746 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 5687 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| || |||||||| ||| |||||| | ||||| Sbjct 5686 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 5627 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| | || | ||| || ||||| Sbjct 5626 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 5598 >seq77 Length=352580 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||| | ||||| ||||| || ||||||| ||| Sbjct 348722 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 348781 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| || |||||||| ||| |||||| | ||||| Sbjct 348782 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 348841 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| | || | ||| || ||||| Sbjct 348842 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 348870 >seq67 Length=351041 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||| | ||||| ||||| || ||||||| ||| Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| || |||||||| ||| |||||| | ||||| Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| | || | ||| || ||||| Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 347247 >seq62 Length=351717 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||| | ||||| ||||| || ||||||| ||| Sbjct 347099 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 347158 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| || |||||||| ||| |||||| | ||||| Sbjct 347159 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 347218 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| | || | ||| || ||||| Sbjct 347219 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 347247 >seq15 Length=381730 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||| || | ||||| ||||||||||| || || ||||| Sbjct 261633 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 261692 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| || |||||||| || ||||| || || || |||||| || || Sbjct 261693 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 261752 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 261753 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 261811 >seq3 Length=1872122 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| || ||||| | ||||| ||||| || ||||||| ||| Sbjct 1868264 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGGGGAATGCTCTCT 1868323 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| || |||||||| ||| |||||| | ||||| Sbjct 1868324 TTGTCGTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTG 1868383 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| | || | ||| || ||||| Sbjct 1868384 ATTGTCTTGCGGGTGAGAGTCTTGACGAA 1868412 >seq7 Length=2436850 Score = 91.5 bits (100), Expect = 3e-13 Identities = 182/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658 |||||| | ||||||| ||||||||| | || | | || ||| |||| || | | Sbjct 486855 TCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAGAACTTGGACTGGACGCTCATGT 486914 Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718 | ||||| ||| ||||| |||| ||| ||||| || |||||| |||| |||| Sbjct 486915 GCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAATTCGAGGCTCTGTATG 486974 Query 160719 AAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATC 160778 | | ||||| || |||||| | | ||| | | || || | |||||| || Sbjct 486975 AGAAGTACGAGAAGGAGGGACGTGGTCGCAAGACCATCCGTGCTCAGAAGCTGTGGTATT 487034 Query 160779 ACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCT 160838 |||||| | ||||| ||| |||| ||||| || |||||||||||| | Sbjct 487035 CCATCCTGGAAGCCCAGACCGAAACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCA 487094 Query 160839 GTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 |||||||| |||||||||||| | |||| Sbjct 487095 ACCGCAAGAGCAACCAGAAGAACCTGGGAA 487124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478799599099