Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq131 95.1 8e-15 seq128 89.7 3e-13 seq15 89.7 3e-13 >seq131 Length=1298602 Score = 95.1 bits (104), Expect = 8e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| |||| |||| || ||||| || || || || Sbjct 570946 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 571005 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| |||||||| | || | ||||||||||| ||||| |||||| Sbjct 571006 GATCAGTCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTT 571065 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || |||| ||| ||||| ||||| ||||| ||||| || Sbjct 571066 GTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 571125 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/210 (70%), Gaps = 10/210 (5%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCT 34836 ||||| |||||| || ||||||||||| ||||| | |||| | || | || || |||| Sbjct 570706 GTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCGTCCTCAAGCT 570764 Query 34837 GTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCT 34896 | || || ||||| || || || ||||| || | || | ||||||||||| ||||| Sbjct 570765 GCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCT 570824 Query 34897 TCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 | ||||| || | ||||| || | ||||| || | || ||||| || Sbjct 570825 TTGACTTGAC--AT--TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTG 570880 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || |||||||||||| Sbjct 570881 CCGGTCAACGTCTTGACGAAGATCTGCATA 570910 >seq128 Length=1745744 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| |||| |||| |||||||| || || || || Sbjct 1611353 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 1611412 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 1611413 ATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 1611470 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || || | ||| || || || |||||||| ||||| Sbjct 1611471 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 1611528 Query 34967 CACAAAGATCTGCATATT 34984 || || |||||||| || Sbjct 1611529 GACGAAAATCTGCATCTT 1611546 >seq15 Length=381730 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| || Sbjct 261633 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 261692 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 261693 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 261752 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 261753 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 261811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632820575016