Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 7e-12 >seq7 Length=2436850 Score = 86.0 bits (94), Expect = 7e-12 Identities = 214/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| ||||| || ||||| | | | | ||||| ||||| || || ||||| | | Sbjct 486964 CTCGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGT 486905 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| ||| | || | || | |||| || | ||| || ||||| ||||| | || Sbjct 486904 CCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAA 486845 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 || || | || | | ||||| ||||| ||| | || ||||| || || | Sbjct 486844 CAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAA 486785 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | |||| || || || ||||| || Sbjct 486784 GACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACC 486725 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | |||||||||||| ||||| | |||| | ||| || | |||||| || || Sbjct 486724 CTGGTCGACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGA 486665 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 |||| ||||| || | ||| ||| Sbjct 486664 GGTACCGTTGGTGCCAGCAATGTAA 486640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107415807080