Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq92 111 1e-19 seq77 111 1e-19 seq67 111 1e-19 seq62 111 1e-19 seq3 111 1e-19 >seq92 Length=352844 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 268188 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 268129 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 268128 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 268069 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 268068 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 268009 Query 29959 TAGAGCTGACA 29969 |||||||| || Sbjct 268008 TAGAGCTGGCA 267998 Score = 95.1 bits (104), Expect = 1e-14 Identities = 253/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| ||||||||||||| | ||| | Sbjct 267902 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 267843 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCA---CGGCGTTTTGCAGCTGAT 30121 | | || ||| | |||||||| | | || || | |||| |||||| | Sbjct 267842 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGC------CAGCTGGT 267789 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | || |||||| | |||| |||||| || || || |||| || Sbjct 267788 CGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 267729 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| |||||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 267728 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 267669 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 267668 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 267609 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 ||||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 267608 TGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 267550 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 267549 ACCCGTTTTGTTGTGAGCAGAGG 267527 >seq77 Length=352580 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 86280 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 86339 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 86340 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 86399 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 86400 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 86459 Query 29959 TAGAGCTGACA 29969 |||||||| || Sbjct 86460 TAGAGCTGGCA 86470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 253/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| ||||||||||||| | ||| | Sbjct 86566 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 86625 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCA---CGGCGTTTTGCAGCTGAT 30121 | | || ||| | |||||||| | | || || | |||| |||||| | Sbjct 86626 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGC------CAGCTGGT 86679 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | || |||||| | |||| |||||| || || || |||| || Sbjct 86680 CGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 86739 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| |||||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 86740 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 86799 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 86800 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 86859 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 ||||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 86860 TGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 86918 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 86919 ACCCGTTTTGTTGTGAGCAGAGG 86941 >seq67 Length=351041 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 84657 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 84716 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 84717 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 84776 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 84777 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 84836 Query 29959 TAGAGCTGACA 29969 |||||||| || Sbjct 84837 TAGAGCTGGCA 84847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 253/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| ||||||||||||| | ||| | Sbjct 84943 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 85002 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCA---CGGCGTTTTGCAGCTGAT 30121 | | || ||| | |||||||| | | || || | |||| |||||| | Sbjct 85003 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGC------CAGCTGGT 85056 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | || |||||| | |||| |||||| || || || |||| || Sbjct 85057 CGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 85116 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| |||||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 85117 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 85176 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 85177 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 85236 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 ||||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 85237 TGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 85295 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 85296 ACCCGTTTTGTTGTGAGCAGAGG 85318 >seq62 Length=351717 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 84657 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 84716 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 84717 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 84776 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 84777 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 84836 Query 29959 TAGAGCTGACA 29969 |||||||| || Sbjct 84837 TAGAGCTGGCA 84847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 253/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| ||||||||||||| | ||| | Sbjct 84943 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 85002 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCA---CGGCGTTTTGCAGCTGAT 30121 | | || ||| | |||||||| | | || || | |||| |||||| | Sbjct 85003 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGC------CAGCTGGT 85056 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | || |||||| | |||| |||||| || || || |||| || Sbjct 85057 CGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 85116 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| |||||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 85117 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 85176 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 85177 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 85236 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 ||||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 85237 TGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 85295 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 85296 ACCCGTTTTGTTGTGAGCAGAGG 85318 >seq3 Length=1872122 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| ||||| ||||| || | || | ||| || | ||||||||| |||||| Sbjct 1605822 GGCTCGCGCTCCAGCTGTGTCTTGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 1605881 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| |||| || ||| || |||| || |||||||| | ||||| || Sbjct 1605882 CCCATAACGTGGGTAAGGCTTCCGGGCACTAGGTCGCACACGTGAGCGAGCATGTGTGTT 1605941 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| ||||| | || || |||||||| | |||| |||| Sbjct 1605942 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCAAGGCCCATGTCGCAGGACCGCTGG 1606001 Query 29959 TAGAGCTGACA 29969 |||||||| || Sbjct 1606002 TAGAGCTGGCA 1606012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 253/383 (66%), Gaps = 14/383 (4%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| ||||||||||||| | ||| | Sbjct 1606108 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCAGGCGCTGAGGATCA 1606167 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCA---CGGCGTTTTGCAGCTGAT 30121 | | || ||| | |||||||| | | || || | |||| |||||| | Sbjct 1606168 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATAATCTCGGC------CAGCTGGT 1606221 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | || |||||| | |||| |||||| || || || |||| || Sbjct 1606222 CGACGCCCTTGCCAGCATAATCTGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 1606281 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| |||||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 1606282 ACTGAAACCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 1606341 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 1606342 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 1606401 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 ||||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 1606402 TGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAAG 1606460 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 1606461 ACCCGTTTTGTTGTGAGCAGAGG 1606483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616618934681