Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 390 2e-103 seq141 176 8e-39 >seq7 Length=2436850 Score = 390 bits (432), Expect = 2e-103 Identities = 1148/1743 (66%), Gaps = 86/1743 (5%) Strand=Plus/Minus Query 212568 GGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCC---CTTGCCC 212624 ||| |||| || |||| || || || ||||||||||||||||| || || ||| | Sbjct 488103 GGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTT---C 488047 Query 212625 CAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTG 212683 ||||| ||| | |||||| |||| | | ||| | ||| ||| | || || Sbjct 488046 CAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATTGTGGGGTCCTTCATG 487996 Query 212684 GCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCAT 212743 || | |||||||||||| ||| || ||||| | | | ||||| ||||| Sbjct 487995 -------TGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCAT 487943 Query 212744 GTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTC 212803 | | || | | ||| || | |||||| ||||||||| | | | |||| || || Sbjct 487942 CTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCTTC 487883 Query 212804 TGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCAT 212860 |||| | |||||||||||| | || || | | ||| | | | | ||| Sbjct 487882 GGGGATGTTGGGGATGTTCTGAATGGAGCCATTCTCAGCAATGATACGGTTCTT---CAT 487826 Query 212861 GTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTG 212920 | | ||| ||||||||| || ||||| ||||| || |||||||| | ||| Sbjct 487825 GGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTG 487766 Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||| || || | || || | | |||||| | ||| |||||||||||||||| || ||| Sbjct 487765 GAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTC 487706 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 |||||| ||||||||||| | || ||||| || ||||| || || | || | ||||| Sbjct 487705 GTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTT 487646 Query 213041 CCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAG 213100 | | |||||||| ||| | | ||| ||||||| || ||| ||| Sbjct 487645 GCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCG------AGTCCCA-CTCCCA--CAG 487595 Query 213101 GTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 ||| | ||| || | ||||||||| || || | |||||| | | | || || Sbjct 487594 GTCAGAGGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCC 487535 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGC 213220 || | | || |||||| || | | ||||||| | ||| || |||| ||||| || Sbjct 487534 CTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGC 487475 Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 | ||||||||| ||||| |||| | |||| |||| ||||| || ||| ||||| Sbjct 487474 ATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAAGGG 487415 Query 213281 CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| || | |||| | || || || |||||||| || | || ||||||| ||| Sbjct 487414 CATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGGTG 487355 Query 213341 TCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 | || ||| ||| | ||||| | ||||| |||| || ||||||||||| Sbjct 487354 GCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTT 487295 Query 213401 GAGGTTGCGGGTGGCCACTTTGGTGAC---ATGGGCCAGGTACTCGTGATTGAACACGTA 213457 ||||||||| |||| |||||||| |||| || | || | || |||| Sbjct 487294 AAGGTTGCGGACAACCACCTTGGTGACTTCATGG---AGCTTCT------TAAAGTCGTA 487244 Query 213458 GCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGC 213511 || || || | ||| | |||| ||||| | ||||| ||||||||| || Sbjct 487243 GCAGCCTTCGTTGTAGTCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGC 487184 Query 213512 CACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGT 213571 ||||| | | | | |||||| || ||||||||||| |||||| || |||||||| Sbjct 487183 AACCTCATCTGGGGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGT 487124 Query 213572 GCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTGTAGAGCATGTAGGGGG 213630 |||||||||| ||||| ||| ||| | |||| |||||||||||||||| ||||| Sbjct 487123 TCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGT 487065 Query 213631 ACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 || || || ||||| |||| || ||| || | | || || | Sbjct 487064 TACCAGTTTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCACGGATGGTCT 487005 Query 213691 GCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCC 213750 | || ||| | | |||||||| || || || | | |||||| | ||| Sbjct 487004 TGCGACCACGTCCCTCCTT---CTCGTACTTCTCATACAGAGCCTCGAATTCCTCGCCAT 486948 Query 213751 AGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGAGGCTCCAGTCCCCGT- 213804 || | ||| || | || |||| || || || |||||||| |||||||| || Sbjct 486947 AG---CAGTC-AG-CAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTT 486893 Query 213805 CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGG 213864 | |||| || | || |||||| || || || | ||| || || ||||| ||| | | Sbjct 486892 CTTCTCA-ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAG 486834 Query 213865 TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGT 213924 | ||| ||| || ||| ||||| ||||| || || ||||||| ||| |||| Sbjct 486833 CGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAATTCAAAGACGTCGGCGT 486774 Query 213925 GCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCA 213981 |||| ||||| | ||||||||||||||| || || | |||| || |||||||| || Sbjct 486773 GCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACAT 486714 Query 213982 GCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGG 214041 ||||| ||||||||| || || | ||| | | |||||||| ||||||| Sbjct 486713 ATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGG 486654 Query 214042 TTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCA 214097 | || || || || ||||||| ||| | || ||| |||| | || || ||| Sbjct 486653 TGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGC-GGTGGACGTTCAAGCCGATACCA 486598 Query 214098 CCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTG 214157 || || |||||| |||||||| || | ||| ||| || ||| || | ||||| Sbjct 486597 CCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCAATGCTA 486538 Query 214158 TCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTT 214216 || || | | || | ||||||||| || |||| ||||||| | | |||| || Sbjct 486537 TCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCCTGCGGGGTACCAGCATT 486479 Query 214217 GAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAG 214276 ||| || |||||| ||||||| | | |||||| |||| | ||| |||| |||||||| Sbjct 486478 GAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 486419 Query 214277 GAC 214279 ||| Sbjct 486418 GAC 486416 >seq141 Length=465755 Score = 176 bits (194), Expect = 8e-39 Identities = 373/555 (67%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| |||||||||||| |||| | || ||||| || ||||||| ||||||| ||| Sbjct 372340 AGCAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAG 372399 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||||||||||||| || | || ||||||||||| || | || |||| || | Sbjct 372400 GTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGCTG 372459 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 |||||||| ||||| || || || || || || | || | || |||| ||||||| Sbjct 372460 AAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTG 372519 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 || |||||| | |||||||| |||||||| |||||| || || ||||| ||| Sbjct 372520 TCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATG 372579 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCG 48424 || |||||| | ||| || | ||| | ||||| || ||| | | Sbjct 372580 GCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAG 372639 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 || |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 372640 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCG 372699 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | ||| || || | ||| | ||| | ||| ||||| ||||| || || || || Sbjct 372700 GGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGAG 372759 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---- 48600 || ||||||||||| |||| || | ||| | ||||| | | | || || Sbjct 372760 GCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTT 372818 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||||| | || | || ||| ||| || | ||||| | ||||||||||| || Sbjct 372819 GTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTC 372878 Query 48661 TGCTTTTTTGTACAT 48675 || || |||||||| Sbjct 372879 GGCCTTCTTGTACAT 372893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530506100480