Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq141 259 9e-64 seq7 250 5e-61 >seq141 Length=465755 Score = 259 bits (286), Expect = 9e-64 Identities = 399/565 (71%), Gaps = 7/565 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 372902 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 372843 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 372842 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 372784 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| |||||||| || || || |||||||| ||| |||| | Sbjct 372783 TCACATCCTGGCCTTCTTTGCCGCCTCTGACGGCATTGTCAACGAGAACCTGGTCGAGCG 372724 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 372723 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 372664 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||||| | || | Sbjct 372663 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 372604 Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | || | || | || || ||||| ||| ||| || ||||| | |||||| Sbjct 372603 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGCAAGAAGGCCG 372545 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||| ||||||||| | | ||| | || | |||| | |||| ||||| |||| Sbjct 372544 ACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCT 372485 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 |||| || || ||||| ||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 372484 TTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTCTGGCTCAAGA 372425 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || ||| ||||||||||||||||||| | |||||||||| Sbjct 372424 AGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTC 372365 Query 26012 TCCACAGAGATTTTGCCTGCCTGCT 26036 |||||| || |||||||||||||| Sbjct 372364 TCCACACCGACTTTGCCTGCCTGCT 372340 >seq7 Length=2436850 Score = 250 bits (276), Expect = 5e-61 Identities = 849/1284 (66%), Gaps = 63/1284 (5%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| || ||||||||||||||||||||| |||||| || || | ||||||||||| Sbjct 487482 AGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTGACGAGCCTCGGGAGA 487424 Query 221479 AGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||||| ||||| || ||||| ||||||| || ||||| || || | ||| Sbjct 487423 CTCAAAGGGCATGCGCAGGGCAAG-GAAAG-CGTCGGCAAGACCCTGGACACCAACACCA 487366 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | | ||||| | |||| | || |||| || || || |||||| | Sbjct 487365 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGGTTGACAT 487308 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653 | || | ||||| ||||| | ||| |||||||| ||| | |||| ||| | Sbjct 487307 CAATGATCTTGTTAAGGTTGCG------GAC---AACCACCTTGGTGA-CTTCATGGAGC 487258 Query 221654 TTGAACACCAACTCG---CCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 || | || ||| | ||| |||| | | || ||| |||| ||||| | Sbjct 487257 TT---CTTAAAGTCGTAGCAGCCTTCGTTGTAG---TCGACATAAGCAGGGAGGGCCAAA 487204 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTA 221767 ||||| ||| || || || ||||| || || || | |||| || ||||| || Sbjct 487203 GAGGCCAAGTTGCAAACAGCAACCTCATC--TGG-GGCACAGTACTCGATAATCTCGGTG 487147 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 ||||||||| || |||||| ||||||| || || || |||||| ||| || Sbjct 487146 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 487087 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||||||||| ||||| ||||| || ||| || |||| || | ||| Sbjct 487086 TCCTTGTAGAGCATGAAGGGGTTACCAGTTTCGGTCTGGGCTTCCAGGATGGAATACCAC 487027 Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGT 221943 || | |||| || | | ||| | ||| | ||||| ||| || ||| | | Sbjct 487026 AGCT-TCTGAGCACGGATGGTCTTGC-GACCACGTCCCTC---CTTCTCGTACTTCTCAT 486972 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 | ||||| | | || | || || || || | ||||| || || | ||| || Sbjct 486971 ACAGAGCCT--CGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCA 486914 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||| || |||||| | ||| | | || | || ||||||||| || || ||||| || Sbjct 486913 CATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAG 486854 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 || | || | || | | || ||| ||| ||||| ||| || | ||||| | Sbjct 486853 AGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAG 486794 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 || ||||| | ||| |||||||| ||||| || |||| ||| | || || || ||||| Sbjct 486793 GAATTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTT 486734 Query 222184 GTTGCCACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGAAGGGTCGGTACC 222241 ||| |||||||| || || || ||| ||| | |||||||| ||||| | || | Sbjct 486733 GTTACCACCCTGGTCGAC-ATA-TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATA 486676 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC-- 222299 | |||||||| |||||||||||| |||||| | ||| ||| | || | | Sbjct 486675 ATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGG 486619 Query 222300 TGGCAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| | || |||||||||||| || || || |||||||| || |||| |||||| Sbjct 486618 TGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTG 486559 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| || || ||||| | || | || || || || |||| ||| Sbjct 486558 TCATAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGG 486499 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || || || || ||||| ||||| ||| || || ||| | |||||| Sbjct 486498 GCCTGCGGGGTACCAGCATTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGAC 486439 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || || | ||| ||||| | ||| | | |||| ||| ||| || | | | | Sbjct 486438 ATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACAC- 486380 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595 || ||| ||||| ||| |||| ||| ||| || | |||| || ||||| Sbjct 486379 TCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGGTAT 486322 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 ||| |||| ||||||||| || ||||| | | || ||||||| ||| || | | Sbjct 486321 GATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATG 486262 Query 222656 GCGGCGTCCAGCTCCGACTTGTGC 222679 |||| ||| |||||| ||||||| Sbjct 486261 GCGGAGTCGAGCTCCTCCTTGTGC 486238 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 487777 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 487718 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||| ||||| || ||||| || || | Sbjct 487717 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 487658 Query 221236 CAGCAGACTGTTGCGC 221251 |||| ||||||||| Sbjct 487657 GAGCAAGCTGTTGCGC 487642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842512719680