Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq131 105 4e-17 >seq131 Length=1298602 Score = 105 bits (116), Expect = 4e-17 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 |||||||||||| ||||| |||||||| || || || || || || || ||| | | Sbjct 570688 ACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGAATGTTGTAGTC-GCTCAAGG 570746 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | || ||||| ||||| |||||||| |||||||| || ||||| || ||||| | Sbjct 570747 TGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATAC 570806 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | |||||||| ||||||||| |||||| || || || || | || | || | || Sbjct 570807 CCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCA 570866 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| | ||||| ||||| || || Sbjct 570867 A-TGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTG 570906 Score = 96.9 bits (106), Expect = 2e-14 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||| || |||||||| ||||| ||||| ||||| || || ||||||||| Sbjct 571257 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 571316 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 || || |||||||| || ||||| || ||| || || ||||| | | | | Sbjct 571317 ATGCCCTCCTTGTCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCGA-C 571375 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || |||||||| ||||| ||||| ||||| Sbjct 571376 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 571420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268170749714156