Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001931985.1_202017-01-04] 197 sequences; 42,030,438 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq5 221 2e-52 seq131 183 4e-41 seq128 181 1e-40 seq92 118 1e-21 seq77 118 1e-21 seq67 118 1e-21 seq62 118 1e-21 seq3 118 1e-21 seq195 102 1e-16 >seq5 Length=253754 Score = 221 bits (244), Expect = 2e-52 Identities = 466/687 (68%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 235968 GGTATCGACCTGGGTACTACGTACTCCTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 235910 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || ||| | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 235909 TATCATCGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 235850 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| | || ||||| || || || ||| || |||||||| || || || Sbjct 235849 CGAGCGTCTGATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 235790 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | || || ||||||||| | || | ||||| | || || Sbjct 235789 CTTCGACGCCAAGCGATTGATCGGACGCAAGTTTGCCGACTCCGAGGTCCAGGCTGACAT 235730 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | |||| ||||| | | | || || Sbjct 235729 GAAGCACTTCCCCT-TCAAGATCGTCGACAAG-GGCTCC-AAGCCCGTCGTCGAGGTCGA 235673 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| || | ||||| || || || || ||| | ||| || Sbjct 235672 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCAA 235613 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || || | | | || | || || || | || || | ||||| Sbjct 235612 GATGCGTGAGACCGCCGAGTCCTACCTCGGAACCACCGTCAACAACGCCGTCATCACTGT 235553 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || || || || |||||||| | | ||||| || Sbjct 235552 CCCCGCCTACTTCAACGACAGCCAGCGTCAAGCTACCAAGGACGCCGGTCTCATTGCCGG 235493 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| || || || || || || Sbjct 235492 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGCCTTGA 235433 Query 195844 CAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||| || ||| | | | || || | ||||| ||||||||||||||||| || Sbjct 235432 CAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACCTT 235376 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| Sbjct 235375 CGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 235316 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| | ||||||||||||||||| Sbjct 235315 CACTCACTTGGGTGGTGAAGATTTCGA 235289 >seq131 Length=1298602 Score = 183 bits (202), Expect = 4e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| |||||||| || |||||||||||||| ||||| || || || ||||| Sbjct 571125 GTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGAC 571066 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| || || || || || ||||| ||||| || Sbjct 571065 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGACTGATC 571006 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || |||||||| |||||||| ||||| || |||||| | || |||||| | || ||||| Sbjct 571005 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAA 570946 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| |||||||| || | || || |||||| Sbjct 570945 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGT 570910 Score = 170 bits (188), Expect = 3e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || || || ||||| || || |||||||||||||| || | Sbjct 570686 GTGGTATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACAATCACCCTCGAGGTGGAAT 570627 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || |||||||||||||| || | Sbjct 570626 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCTG 570567 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || ||||||||||| ||||| ||||| || || ||| | || | Sbjct 570566 ACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACT 570507 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||| || || ||| | ||||| | ||||| ||||| Sbjct 570506 ACAACATCCAGAAGGAGAGCACACTGCACTTGGTTCTGCGTCTTCGTGGTGG 570455 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 571423 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 571364 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || | ||||| || || ||||| |||||||| || || ||| Sbjct 571363 GATACCATCGACAATGTGAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 571304 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || || || || ||||| || || || | || |||||| Sbjct 571303 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 571244 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | ||||| |||||| Sbjct 571243 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGGT 571196 >seq128 Length=1745744 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 1611543 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1611484 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 1611483 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1611424 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || |||||||| ||||| || ||||| || |||||| | || |||||| Sbjct 1611423 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 1611364 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || ||||||||||| || ||||| || || | || || |||||||| Sbjct 1611363 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 1611314 >seq92 Length=352844 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||| || || || || || || || || | || || ||||||||| |||| || | Sbjct 5584 GTGGTATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAAT 5643 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || || || ||||||| || | Sbjct 5644 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTG 5703 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 | |||||||| | || ||||||||||| ||||| ||||| || Sbjct 5704 ACCAGCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 5746 >seq77 Length=352580 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||| || || || || || || || || | || || ||||||||| |||| || | Sbjct 348884 GTGGTATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAAT 348825 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || || || ||||||| || | Sbjct 348824 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTG 348765 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 | |||||||| | || ||||||||||| ||||| ||||| || Sbjct 348764 ACCAGCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 348722 >seq67 Length=351041 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||| || || || || || || || || | || || ||||||||| |||| || | Sbjct 347261 GTGGTATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAAT 347202 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || || || ||||||| || | Sbjct 347201 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTG 347142 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 | |||||||| | || ||||||||||| ||||| ||||| || Sbjct 347141 ACCAGCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 347099 >seq62 Length=351717 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||| || || || || || || || || | || || ||||||||| |||| || | Sbjct 347261 GTGGTATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAAT 347202 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || || || ||||||| || | Sbjct 347201 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTG 347142 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 | |||||||| | || ||||||||||| ||||| ||||| || Sbjct 347141 ACCAGCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 347099 >seq3 Length=1872122 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||| || || || || || || || || | || || ||||||||| |||| || | Sbjct 1868426 GTGGTATACAGATTTTCGTCAAGACTCTCACCCGCAAGACAATCACCCTCAAGGTGGAAT 1868367 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || || || ||||||| || | Sbjct 1868366 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCACGACAAAGAGAGCATTCCCCCTG 1868307 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 | |||||||| | || ||||||||||| ||||| ||||| || Sbjct 1868306 ACCAGCAACGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGG 1868264 >seq195 Length=535958 Score = 102 bits (112), Expect = 1e-16 Identities = 170/242 (70%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| ||||| || |||||||| | | ||||| ||| | ||| || ||||| || Sbjct 45351 CAACGTCAGGCCACCAAGGACGCCGGTATCATTGCCGGTTTGAACGTCCTCCGAATTGTC 45292 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || ||||| || ||||||||||||| | | || || | Sbjct 45291 AACGAGCCCACCGCCGCCGCTATTGCCTACGGTCTGGACAAGACTGATGGCG-AGCGCCA 45233 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| ||||| ||||||||||| || ||||| || || || || || Sbjct 45232 GAT-CATTG-TCTACGATCTTGGTGGTGGTACTTTCGATGTTTCTCTCCTGTCCATCGAC 45175 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 ||| | ||||| || |||||| || ||||| || || || |||||||| || || Sbjct 45174 AACGGTGTCTTCGAGGTCTTGGCTACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTT 45115 Query 195986 GA 195987 || Sbjct 45114 GA 45113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860780013840